Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_O08
         (405 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0342 + 16963528-16963598,16963668-16964235,16964350-169647...    28   2.4  
05_01_0260 - 1993075-1994312,1996249-1997191                           28   2.4  
08_02_1372 + 26500093-26500154,26500733-26500933,26501858-265019...    27   5.6  

>07_03_0342 +
           16963528-16963598,16963668-16964235,16964350-16964760,
           16964848-16965051,16968663-16969032,16972466-16972601,
           16972680-16972779,16972933-16973190,16973276-16973314,
           16973420-16973458
          Length = 731

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 49  QDQAFYKTVEMYQFEANDLITKMIEEKNHAGGQNVYGAN 165
           +DQ  Y+ +   Q   +DL+TK +  K H G     G++
Sbjct: 205 EDQRVYEAIAYSQRREDDLLTKALGNKEHRGRTRGVGSS 243


>05_01_0260 - 1993075-1994312,1996249-1997191
          Length = 726

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +1

Query: 13  DRVVTTLIRDVDQDQAFY-KTVEMYQFEANDLITKMIEEKNHAGGQNVYGA 162
           DR      R + + Q F   T+  YQF  NDL++      +  GG  + GA
Sbjct: 208 DRTTPRSYRVLSRAQVFILPTINSYQFNTNDLVSSSWMNTSSIGGTLLRGA 258


>08_02_1372 +
           26500093-26500154,26500733-26500933,26501858-26501936,
           26502652-26502752,26503417-26503516,26503893-26503934,
           26504026-26504067,26504352-26504509,26504708-26504780
          Length = 285

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 43  VDQDQAFYKTVEMYQFEANDLITKMIEEKNHAGGQNVY 156
           VDQ     +  +M   EAN  + + +EE NH  GQ V+
Sbjct: 186 VDQLTELQRKEQMVS-EANRCLRRKLEESNHVRGQQVW 222


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,844,203
Number of Sequences: 37544
Number of extensions: 91236
Number of successful extensions: 203
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)