Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_O08
         (405 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13255| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_32292| Best HMM Match : MrpF_PhaF (HMM E-Value=3.5)                 28   2.5  

>SB_13255| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +1

Query: 10  FDRVVTTLIRDVDQDQAFYKTVEMYQF 90
           F RV+TT  RD+DQD  F  T E Y++
Sbjct: 56  FFRVLTTN-RDIDQDVDFVSTAEAYKY 81


>SB_32292| Best HMM Match : MrpF_PhaF (HMM E-Value=3.5)
          Length = 355

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = -2

Query: 368 SIDMCIFWKSKTDKH*IKALSLN 300
           SID C  W SK DKH I    LN
Sbjct: 19  SIDCCSTWTSKYDKHSIDCCYLN 41


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,648,452
Number of Sequences: 59808
Number of extensions: 127422
Number of successful extensions: 170
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 727815563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)