Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_O08
         (405 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125961-2|AAD14739.1|  343|Caenorhabditis elegans Serpentine re...    28   2.2  
AF106581-5|AAC78210.1|  588|Caenorhabditis elegans Hypothetical ...    27   3.9  
AF068710-4|AAK72089.3|  340|Caenorhabditis elegans Serpentine re...    27   5.1  
AF016686-2|AAB66239.2|  399|Caenorhabditis elegans Hypothetical ...    27   5.1  

>AF125961-2|AAD14739.1|  343|Caenorhabditis elegans Serpentine
           receptor, class j protein15 protein.
          Length = 343

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -1

Query: 327 TLNQSIIIKHVLLLYITKNYERIIRLFFLDLGSLVDYLFF 208
           +L+  I+I H +  YIT  + +++   F   G +  +LFF
Sbjct: 103 SLSYGILIIHFIYRYITLFFPKLVASIFQSTGCICIFLFF 142


>AF106581-5|AAC78210.1|  588|Caenorhabditis elegans Hypothetical
           protein VC5.2 protein.
          Length = 588

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 398 ISTVSINVLMSIDMCIFWKSKTDK 327
           I T   N++  +D C  W+SK DK
Sbjct: 28  IVTFRFNLVNRLDQCTLWRSKLDK 51


>AF068710-4|AAK72089.3|  340|Caenorhabditis elegans Serpentine
           receptor, class j protein16 protein.
          Length = 340

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -1

Query: 327 TLNQSIIIKHVLLLYITKNYERIIRLFFLDLGSLVDYLFF 208
           +L+  I+I H +  YIT  + +++   F   G +  +LFF
Sbjct: 103 SLSYGILIIHFIYRYITLFFPQLVDSIFQPTGCICIFLFF 142


>AF016686-2|AAB66239.2|  399|Caenorhabditis elegans Hypothetical
           protein R07C3.10 protein.
          Length = 399

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +1

Query: 31  LIRDVDQDQAFYKTVEMYQFEANDLITKM--IEEKNHAGG 144
           LIR +D     YK  +M   E N+ ITKM   EEK  A G
Sbjct: 90  LIRGIDYFDFQYKAEKMRIKEENEKITKMDDSEEKKRARG 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,759,543
Number of Sequences: 27780
Number of extensions: 105942
Number of successful extensions: 188
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)