Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_O08
         (405 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g42920.1 68415.m05318 pentatricopeptide (PPR) repeat-containi...    26   8.3  

>At2g42920.1 68415.m05318 pentatricopeptide (PPR) repeat-containing
           protein  and genefinder
          Length = 559

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +1

Query: 256 NYSFIVFCNIK*KYMFNDNALI*CLSVLLFQKMHISIDISTL 381
           NY+++VF  I  K  F  N +I   S   F +M ISI I  L
Sbjct: 75  NYAYLVFTRINHKNPFVWNTIIRGFSRSSFPEMAISIFIDML 116


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,049,510
Number of Sequences: 28952
Number of extensions: 87801
Number of successful extensions: 152
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)