Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_O06
         (411 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock prote...    23   0.88 
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   4.7  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   4.7  
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      21   6.2  

>AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock protein
           70 protein.
          Length = 195

 Score = 23.4 bits (48), Expect = 0.88
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 192 DVDIRKDLYANTVLSGGTTMYPGI 263
           D D+ KD     VL GG+T  P I
Sbjct: 150 DADMTKDQIDEIVLVGGSTRIPKI 173


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 4.7
 Identities = 7/25 (28%), Positives = 17/25 (68%)
 Frame = +1

Query: 55   TNSPTVKSSQSETKGSVAQRLSSSP 129
            +N+P++ + + ++   V QR+S +P
Sbjct: 1406 SNNPSISAFRKKSLAYVQQRMSIAP 1430


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 4.7
 Identities = 7/25 (28%), Positives = 17/25 (68%)
 Frame = +1

Query: 55   TNSPTVKSSQSETKGSVAQRLSSSP 129
            +N+P++ + + ++   V QR+S +P
Sbjct: 1406 SNNPSISAFRKKSLAYVQQRMSIAP 1430


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 20.6 bits (41), Expect = 6.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 278 EGNHSPRSIHDE 313
           EG H+P S+H E
Sbjct: 43  EGYHTPESLHYE 54


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,256
Number of Sequences: 336
Number of extensions: 2492
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8963165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)