Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_O06
(411 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 250 8e-68
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 128 3e-31
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 113 1e-26
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 103 1e-23
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 81 7e-17
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 68 7e-13
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 62 4e-11
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 57 9e-10
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 40 1e-04
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr... 27 1.5
SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 2.0
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 2.6
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces... 25 4.6
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 25 4.6
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 25 6.1
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c... 24 8.0
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 250 bits (611), Expect = 8e-68
Identities = 117/134 (87%), Positives = 123/134 (91%)
Frame = +3
Query: 9 QEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMN 188
QE+ TAA SSSLEKSYELPDGQVITIGNERFR PEALFQPS LG+E GIHE TYNSIM
Sbjct: 225 QELQTAAQSSSLEKSYELPDGQVITIGNERFRAPEALFQPSALGLENAGIHEATYNSIMK 284
Query: 189 CDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGS 368
CDVDIRKDLY N V+SGGTTMYPGIADRMQKEI ALAPS+MK+KI+APPERKYSVWIGGS
Sbjct: 285 CDVDIRKDLYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGS 344
Query: 369 ILASLSTFQQMWIS 410
ILASLSTFQQMWIS
Sbjct: 345 ILASLSTFQQMWIS 358
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 128 bits (310), Expect = 3e-31
Identities = 57/120 (47%), Positives = 82/120 (68%)
Frame = +3
Query: 51 SYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMNCDVDIRKDLYANTV 230
+Y+LPD Q IT+G E F PE LF P +G EA G+H + SI+ D+D+R LY+N V
Sbjct: 244 TYQLPDNQTITLGTECFSAPEVLFNPEMMGSEASGLHIQLFKSILLSDIDLRSTLYSNIV 303
Query: 231 LSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWIS 410
LSGG+T+ G +R E+ A++ ++KI A PER ++ W+GGSILASLSTF+++ I+
Sbjct: 304 LSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLIT 363
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 113 bits (272), Expect = 1e-26
Identities = 59/135 (43%), Positives = 87/135 (64%), Gaps = 12/135 (8%)
Frame = +3
Query: 42 LEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMNCDVDIRKDLYA 221
L ++Y LPDG+VI +G+ER+ CPE LFQP +G E G+ E +++I DVDIRK LY
Sbjct: 236 LMRNYTLPDGRVIKVGSERYECPECLFQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYR 295
Query: 222 NTVLSGGTTMYPGIADRMQKEITAL--------APSTM---KIKIIAPPERKYSVWIGGS 368
VLSGG++MY G+ R++KEI L P+ + K+KI P R+++V+IGG+
Sbjct: 296 AIVLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGA 355
Query: 369 ILAS-LSTFQQMWIS 410
+LA ++ MW+S
Sbjct: 356 VLADIMAQNDHMWVS 370
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 103 bits (247), Expect = 1e-23
Identities = 56/140 (40%), Positives = 77/140 (55%), Gaps = 11/140 (7%)
Frame = +3
Query: 24 AASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEAC---------GIHETTYN 176
A +SS K +E PDG G ERFR E LF PSF + G+HE Y
Sbjct: 271 AKASSRNPKPFEFPDGVTHKFGQERFRISEILFNPSFSASRSAETTPPQGSVGLHELVYQ 330
Query: 177 SIMNCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAP-STMKIKII-APPERKYS 350
SI+ CD ++R L N V++GGT++ PG+++R+Q E+ LA S + + +
Sbjct: 331 SILACDSELRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNA 390
Query: 351 VWIGGSILASLSTFQQMWIS 410
VW GGSILASL FQ +W+S
Sbjct: 391 VWFGGSILASLDNFQHLWVS 410
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 81.0 bits (191), Expect = 7e-17
Identities = 41/89 (46%), Positives = 57/89 (64%), Gaps = 3/89 (3%)
Frame = +3
Query: 153 GIHETTYNSIMNCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 332
GI + N I CDVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHAS 384
Query: 333 ---PERKYSVWIGGSILASLSTFQQMWIS 410
ER Y+ W+GGSIL+SL TF Q+WIS
Sbjct: 385 GHVVERSYASWLGGSILSSLGTFHQLWIS 413
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 67.7 bits (158), Expect = 7e-13
Identities = 31/89 (34%), Positives = 48/89 (53%)
Frame = +3
Query: 72 QVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMNCDVDIRKDLYANTVLSGGTTM 251
QV+ + NERF PE LF PS + + GI E S+ + +I+ L N V GG
Sbjct: 272 QVLNLSNERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCK 331
Query: 252 YPGIADRMQKEITALAPSTMKIKIIAPPE 338
+PG R+ E+ +LAP+ ++K+ P +
Sbjct: 332 FPGFHKRLSSELRSLAPANWEVKVFEPSD 360
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 61.7 bits (143), Expect = 4e-11
Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 15/120 (12%)
Frame = +3
Query: 78 ITIGNERFRCPEALFQPSFLGME-ACGIHETTYNSIMNCDVDIRKDLYANTVLSGGTTMY 254
I +G ERF PE F P + + E N + + +D+RK LY N VLSGG+T++
Sbjct: 280 IDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLF 339
Query: 255 PGIADRMQKEITALAPST--------------MKIKIIAPPERKYSVWIGGSILASLSTF 392
+R+Q+++ + + + +I+ ++ +VW GGS+LA F
Sbjct: 340 KNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEF 399
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 57.2 bits (132), Expect = 9e-10
Identities = 25/92 (27%), Positives = 48/92 (52%)
Frame = +3
Query: 93 ERFRCPEALFQPSFLGMEACGIHETTYNSIMNCDVDIRKDLYANTVLSGGTTMYPGIADR 272
E+ R PE +F PS +G++ GI E + + ++ ++ L +N +++GG PG+ R
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETR 653
Query: 273 MQKEITALAPSTMKIKIIAPPERKYSVWIGGS 368
+++E+T++ P I + W G S
Sbjct: 654 IKRELTSIMPVGSSINVFRASNPLLDAWKGAS 685
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 40.3 bits (90), Expect = 1e-04
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Frame = +3
Query: 207 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILA 377
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 378 SLSTFQQMWI 407
+ ++WI
Sbjct: 587 RIRIVSELWI 596
>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 905
Score = 26.6 bits (56), Expect = 1.5
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -2
Query: 305 GWSEGCDFLLHTVGNTRVHGGT 240
GW+ D +LH G V GGT
Sbjct: 240 GWTTPKDLILHLAGKLTVRGGT 261
>SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 287
Score = 26.2 bits (55), Expect = 2.0
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 269 PYAEGNHSPRSIHDEDQNH 325
P++ NHSPR IH +NH
Sbjct: 172 PFSCLNHSPRQIHKTVRNH 190
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 2.6
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 279 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 389
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 995
Score = 25.0 bits (52), Expect = 4.6
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -2
Query: 200 VNVTVHDGVVCRLVDATSFHTQERGLEESLWATEPFV 90
VN T HDG V + T + Q R +SL + EP V
Sbjct: 610 VNATYHDGTVRYNLFNTYGYDQSRVTYDSLTSIEPNV 646
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.0 bits (52), Expect = 4.6
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -2
Query: 350 RILPLWWRDDFDLHRG 303
RI P+WW D+F G
Sbjct: 178 RIQPIWWMDEFAERNG 193
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 24.6 bits (51), Expect = 6.1
Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 1/93 (1%)
Frame = +3
Query: 75 VITIGNERFRCPEALFQPSFLG-MEACGIHETTYNSIMNCDVDIRKDLYANTVLSGGTTM 251
++T+ NE + E L S + E+ + CD+D ++ + + T +
Sbjct: 136 LVTLPNENNQVIEPLSSQSCKSQLSTQNYSESDFGWNQLCDLD---PIFKSLAFTDDTNL 192
Query: 252 YPGIADRMQKEITALAPSTMKIKIIAPPERKYS 350
+P AD I ++K A RKYS
Sbjct: 193 FPAFADSEAALIMLKKREMTRVKHRAGRPRKYS 225
>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
2|||Manual
Length = 812
Score = 24.2 bits (50), Expect = 8.0
Identities = 6/20 (30%), Positives = 11/20 (55%)
Frame = -1
Query: 249 WWYHQTILCWRTSLYGCQRH 190
W+Y++ CW + G +H
Sbjct: 134 WYYNEKFCCWYSETMGMFKH 153
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,787,939
Number of Sequences: 5004
Number of extensions: 37789
Number of successful extensions: 150
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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