Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_O05
         (507 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5AGB0 Cluster: Potential mitochondrial chaperonin; n=4...    36   0.70 
UniRef50_A6DA05 Cluster: Putative uncharacterized protein; n=1; ...    32   6.5  

>UniRef50_Q5AGB0 Cluster: Potential mitochondrial chaperonin; n=4;
           Saccharomycetales|Rep: Potential mitochondrial
           chaperonin - Candida albicans (Yeast)
          Length = 584

 Score = 35.5 bits (78), Expect = 0.70
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = +2

Query: 245 VMITLSVYVTIIYSFYLYYCKCWYYLF*KNT*G 343
           V+I   +Y+T+  SF L YC  W YLF  NT G
Sbjct: 378 VLIDHGLYITLSDSFRLQYCNLWRYLFSLNTKG 410


>UniRef50_A6DA05 Cluster: Putative uncharacterized protein; n=1;
           Caminibacter mediatlanticus TB-2|Rep: Putative
           uncharacterized protein - Caminibacter mediatlanticus
           TB-2
          Length = 261

 Score = 32.3 bits (70), Expect = 6.5
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +2

Query: 236 NLFVMITLSVYVT-IIYSFYLYYCKCWYYLF*KNT*GYLDRTKFSNEIVHSKVFM*EFMY 412
           N+F+ IT S ++T ++  FYL Y   + Y+F       L +T F +  +     + +F Y
Sbjct: 125 NIFLKITSSPFITQVLIGFYLIYLLFFSYIFLGKFGNSLTKTNFKDAFLTIVSSLIDFSY 184

Query: 413 GHDAFN 430
               FN
Sbjct: 185 WVKTFN 190


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 364,329,874
Number of Sequences: 1657284
Number of extensions: 5552117
Number of successful extensions: 12926
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 12203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12897
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 30528237263
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)