Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_O05
         (507 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4997| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.8  
SB_46909| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00039)          27   6.7  

>SB_4997| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 88

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 339 RVILTGQNSQMRLSIQKYSCKNLC 410
           RVIL G+  +  +   K+SCK +C
Sbjct: 52  RVILLGKRRENAMDFSKFSCKGIC 75


>SB_46909| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00039)
          Length = 685

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +2

Query: 245 VMITLSVYVTIIYSFYLYYCKCWYYLF 325
           ++IT ++  TI + +Y YY   +YY +
Sbjct: 510 IIITTTIIFTICHHYYYYYYYYYYYYY 536


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,717,507
Number of Sequences: 59808
Number of extensions: 180388
Number of successful extensions: 430
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)