Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_O05
         (507 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025469-6|AAR12979.1|  813|Caenorhabditis elegans Hypothetical ...    30   1.1  
AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical ...    30   1.1  
AF036702-14|AAB88378.2|  396|Caenorhabditis elegans Hypothetical...    27   5.9  
AF036702-13|AAB88379.2|  648|Caenorhabditis elegans Hypothetical...    27   5.9  
AF067214-3|AAC17002.1|  211|Caenorhabditis elegans Hypothetical ...    27   7.8  

>AF025469-6|AAR12979.1|  813|Caenorhabditis elegans Hypothetical
           protein W09B6.1b protein.
          Length = 813

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 430 VKCIMTIHKFLHEYF*MDNLI*EFC 356
           ++C+MT  KFLH  F  DNLI   C
Sbjct: 61  MRCLMTAKKFLHHTFRNDNLIHFVC 85


>AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical
           protein W09B6.1a protein.
          Length = 2054

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 430 VKCIMTIHKFLHEYF*MDNLI*EFC 356
           ++C+MT  KFLH  F  DNLI   C
Sbjct: 61  MRCLMTAKKFLHHTFRNDNLIHFVC 85


>AF036702-14|AAB88378.2|  396|Caenorhabditis elegans Hypothetical
           protein F33D4.6a protein.
          Length = 396

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 12/27 (44%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
 Frame = +2

Query: 20  LKEVEVD-LKDLRKSLPRARVHQLKEE 97
           ++EVE + +K  RKSLPR ++H L+++
Sbjct: 317 IEEVEQETIKPKRKSLPRRKIHYLEKK 343


>AF036702-13|AAB88379.2|  648|Caenorhabditis elegans Hypothetical
           protein F33D4.6b protein.
          Length = 648

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 12/27 (44%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
 Frame = +2

Query: 20  LKEVEVD-LKDLRKSLPRARVHQLKEE 97
           ++EVE + +K  RKSLPR ++H L+++
Sbjct: 317 IEEVEQETIKPKRKSLPRRKIHYLEKK 343


>AF067214-3|AAC17002.1|  211|Caenorhabditis elegans Hypothetical
           protein F56C3.5 protein.
          Length = 211

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 365 RILSCQDNPMCSFKISNTNIYSNINKM 285
           +I+ C      SFKIS +++Y+N  KM
Sbjct: 89  KIVKCSSPSPTSFKISPSDMYTNAEKM 115


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,747,339
Number of Sequences: 27780
Number of extensions: 146182
Number of successful extensions: 347
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)