Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_O05
         (507 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g46650.1 68418.m05748 zinc finger (C3HC4-type RING finger) fa...    31   0.45 
At3g29635.1 68416.m03729 transferase family protein similar to a...    27   7.3  

>At5g46650.1 68418.m05748 zinc finger (C3HC4-type RING finger)
           family protein contains similarity to RING-H2 zinc
           finger protein ATL6 [Arabidopsis thaliana] GI:4928403;
           contains Pfam profile PF00097: Zinc finger, C3HC4 type
           (RING finger)
          Length = 289

 Score = 31.1 bits (67), Expect = 0.45
 Identities = 12/44 (27%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +2

Query: 191 QKTNKMFPNRTFT*CNLFVMITLSVYVTIIYSFY-LYYCKCWYY 319
           Q T   +P + ++   L +++T+ + V     F+ +Y+CKC+Y+
Sbjct: 9   QNTTVPYPPQHYSKPPLVIILTVILLVVFFIGFFAIYFCKCFYH 52


>At3g29635.1 68416.m03729 transferase family protein similar to
           anthocyanin 5-aromatic acyltransferase from Gentiana
           triflora GI:4185599, malonyl CoA:anthocyanin
           5-O-glucoside-6'''-O-malonyltransferase from Perilla
           frutescens GI:17980232, Salvia splendens GI:17980234;
           contains Pfam profile PF02458 transferase family
          Length = 458

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 23  KEVEVDLKDLRKSLPRARVHQLKEEAVVGSARMQH 127
           KE+  DL  +   L R  + +L+E+A   SAR  H
Sbjct: 238 KEISPDLVRISLELTRENIEKLREQAKRESARSHH 272


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,037,136
Number of Sequences: 28952
Number of extensions: 123972
Number of successful extensions: 220
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)