Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_O04
(363 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 140 8e-35
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 27 1.2
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 25 3.6
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 4.8
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ... 25 4.8
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch... 24 8.3
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc... 24 8.3
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 24 8.3
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 24 8.3
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|... 24 8.3
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 140 bits (338), Expect = 8e-35
Identities = 63/117 (53%), Positives = 85/117 (72%)
Frame = +2
Query: 8 AFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDS 187
+FFQAL IPTKI++GTIEI +DVH++ KVG SEATLLNMLNISPF+YG+ V +YD
Sbjct: 134 SFFQALGIPTKITRGTIEITSDVHLVSKDAKVGPSEATLLNMLNISPFTYGMDVLTIYDQ 193
Query: 188 GTIFAPAILDIKPEDLREKFLAGVANVAALSWSIGYPTVASAPHSIANGFKNLLAIA 358
G +F+P ILD+ EDL L+ + + A+S YPT+ S HS+ N +KNL+A++
Sbjct: 194 GNVFSPEILDVSEEDLIGHLLSAASIITAISLGANYPTILSVMHSVVNAYKNLVAVS 250
>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 506
Score = 26.6 bits (56), Expect = 1.2
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 177 TCLTTRPYEKGEMFNMLRRVASEAP 103
+ LT PYEKGE N +R S P
Sbjct: 279 SALTRLPYEKGEFINFVRYHPSITP 303
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 25.0 bits (52), Expect = 3.6
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 181 VHLFDNKTIRKGRDVQHVEK 122
V L D +RKG DVQ +EK
Sbjct: 289 VLLSDTAGLRKGEDVQEIEK 308
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 24.6 bits (51), Expect = 4.8
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 245 FLAGVANVAALSWSIGYPTVASAPHSIANGFKNLLAIA 358
+L GV +A + PT S PH + GF + IA
Sbjct: 524 YLVGVPLQSATICVVSLPTEDSQPHVLHEGFLGEVCIA 561
>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 24.6 bits (51), Expect = 4.8
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -3
Query: 181 VHLFDNKTIRKGRDVQHVEKSSFRSS 104
VH D T+R G + SSFR S
Sbjct: 62 VHCLDIPTVRPGSSMSRTSASSFRYS 87
>SPAP8A3.14c |||mitochondrial inner membrane protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 677
Score = 23.8 bits (49), Expect = 8.3
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -3
Query: 172 FDNKTIRKGRDVQHVEKSSFRSSHLITRL 86
F + +RK V H++ SS R +I R+
Sbjct: 122 FRKEQLRKFAKVFHIKSSSLRKKEIIERI 150
>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 23.8 bits (49), Expect = 8.3
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -3
Query: 259 HSSKELLAKVLRLDVENCR 203
H +E+ K+L LD +NC+
Sbjct: 60 HGQQEIHNKILDLDFQNCK 78
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 23.8 bits (49), Expect = 8.3
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 262 QRGRALVVHRVPDGRVCASFHRERFQ 339
+RG++LVV + +GR CA +FQ
Sbjct: 2068 RRGQSLVVWGIQEGRQCAREIDLKFQ 2093
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 23.8 bits (49), Expect = 8.3
Identities = 14/61 (22%), Positives = 32/61 (52%)
Frame = +2
Query: 134 LNISPFSYGLVVKQVYDSGTIFAPAILDIKPEDLREKFLAGVANVAALSWSIGYPTVASA 313
L+I F+ G+ + + +G++ +P P + F+A A+ +++S YP ++ +
Sbjct: 186 LDIREFNTGMHIINLLLNGSLKSP------PVSISPSFIASAASTSSVSAPSQYPGLSRS 239
Query: 314 P 316
P
Sbjct: 240 P 240
>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
Alp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 23.8 bits (49), Expect = 8.3
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +2
Query: 89 PGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPAILDIKPED 232
P + G+ L +SPFS + + +YD T P+ L+I ++
Sbjct: 21 PALEEGSVYHVSLKSEGVSPFSDRIQLNYLYDGKTFSDPSNLNIHQQE 68
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,505,086
Number of Sequences: 5004
Number of extensions: 27976
Number of successful extensions: 89
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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