Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_O04
         (363 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)         54   3e-08
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.6  
SB_8631| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   2.6  
SB_8256| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   2.6  
SB_7978| Best HMM Match : F5_F8_type_C (HMM E-Value=1.2e-22)           27   4.6  
SB_53284| Best HMM Match : DUF1279 (HMM E-Value=1.5)                   26   8.0  
SB_30801| Best HMM Match : fn3 (HMM E-Value=0)                         26   8.0  
SB_16975| Best HMM Match : MFS_1 (HMM E-Value=2.6e-24)                 26   8.0  
SB_14512| Best HMM Match : IncA (HMM E-Value=0.12)                     26   8.0  
SB_13517| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.0  

>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
          Length = 261

 Score = 54.0 bits (124), Expect = 3e-08
 Identities = 23/34 (67%), Positives = 31/34 (91%)
 Frame = +2

Query: 8   AFFQALSIPTKISKGTIEIINDVHILKPGDKVGA 109
           +FFQAL+IPTKI++GTIEIINDVH++K  +K+ A
Sbjct: 118 SFFQALAIPTKIARGTIEIINDVHLIKKDEKLKA 151


>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4527

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +2

Query: 29   IPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSY-GLVVKQVYDSGTIFAP 205
            + T++S G+   +  V  +KP  + G  + T ++  N+S  S     VK ++ S T+  P
Sbjct: 2282 VETELSAGSRTSLPKVSAIKPSVEYGQLDDTEIHETNLSASSIPSEKVKSLFMSSTLDTP 2341

Query: 206  AILDI 220
            + L I
Sbjct: 2342 SSLSI 2346


>SB_8631| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 294

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -3

Query: 223 LDVENCRREDGTGVVHLFDNKTIRKGRDVQHVEKSSFR 110
           L+VE  +RE    +   FD   + + R ++HVE+S  R
Sbjct: 93  LNVEELQREILDDIKRAFDEGDVEELRSLKHVERSKLR 130


>SB_8256| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 624

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 15/58 (25%), Positives = 24/58 (41%)
 Frame = -1

Query: 282 HESAATLATPARNFSRRSSGLMSRIAGAKMVPESYTCLTTRPYEKGEMFNMLRRVASE 109
           H S       ++  + R  G M+      + P+ YTC    P EK E+  + R +  E
Sbjct: 62  HHSNQKTTEASKAVAHRPRGGMAAKTQGILAPKGYTCRPIVPAEKAELLPVARAMHRE 119


>SB_7978| Best HMM Match : F5_F8_type_C (HMM E-Value=1.2e-22)
          Length = 1151

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +1

Query: 205  GNSRHQAGGPSREVPCWSGQRG-RALVVHRVPDGRVCA 315
            GN  +   G + E  CW G  G R  +V+RV D   C+
Sbjct: 986  GNEAYARDGLAAESKCWKGVGGQRTNMVYRVQDMPGCS 1023


>SB_53284| Best HMM Match : DUF1279 (HMM E-Value=1.5)
          Length = 427

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +1

Query: 238 REVPCWSGQRGRALVVH 288
           R V  W G RGRAL VH
Sbjct: 316 RSVRTWRGGRGRALCVH 332


>SB_30801| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 1027

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +1

Query: 154  VWSCCQTGVRLRYHLRAGNSRHQAGGPSREVPCWSGQ 264
            +WS       + Y++       + GGPS EV C + Q
Sbjct: 989  IWSLTSLEKFVEYNVTVAAFNEKGGGPSAEVMCTTDQ 1025


>SB_16975| Best HMM Match : MFS_1 (HMM E-Value=2.6e-24)
          Length = 1193

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +2

Query: 155 YGLVVKQVYDSGTIFAP-AILDIKPEDL 235
           YG++ ++V  SGT+F P + L +  EDL
Sbjct: 686 YGIISEEVIKSGTLFGPYSGLVVSSEDL 713


>SB_14512| Best HMM Match : IncA (HMM E-Value=0.12)
          Length = 642

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +1

Query: 238 REVPCWSGQRGRALVVH 288
           R V  W G RGRAL VH
Sbjct: 316 RSVRTWRGGRGRALCVH 332


>SB_13517| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 40

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -3

Query: 94 TRLQDMDIIDNFNSTL*NLSGDGKSLEESL 5
          T L+  DI+D F S    LSG G+ LE S+
Sbjct: 3  TYLRQGDILDGFTSLTGGLSGVGEVLELSI 32


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,684,858
Number of Sequences: 59808
Number of extensions: 225157
Number of successful extensions: 683
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 570200590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)