Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_O04
(363 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 153 4e-38
At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)... 148 1e-36
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)... 148 1e-36
At1g25260.1 68414.m03134 acidic ribosomal protein P0-related con... 35 0.014
At1g64255.1 68414.m07280 SWIM zinc finger family protein contain... 33 0.057
At5g53150.1 68418.m06607 DNAJ heat shock N-terminal domain-conta... 29 1.2
At5g12430.1 68418.m01461 DNAJ heat shock N-terminal domain-conta... 29 1.2
At1g01790.1 68414.m00098 K+ efflux antiporter, putative (KEA1) i... 28 1.6
At3g48290.1 68416.m05270 cytochrome P450, putative very strong s... 28 2.1
At2g44580.1 68415.m05548 zinc finger (C3HC4-type RING finger) fa... 27 4.9
At1g74790.1 68414.m08665 expressed protein contains similarity t... 27 4.9
At4g15720.1 68417.m02393 pentatricopeptide (PPR) repeat-containi... 26 6.5
At3g48270.1 68416.m05268 cytochrome P450 71A26, putative (CYP71A... 26 6.5
At3g02600.1 68416.m00251 phosphatidic acid phosphatase family pr... 26 6.5
At5g59130.1 68418.m07411 subtilase family protein contains simil... 26 8.6
At5g25590.1 68418.m03045 expressed protein contains Pfam profile... 26 8.6
At5g12020.1 68418.m01405 17.6 kDa class II heat shock protein (... 26 8.6
At4g32880.1 68417.m04679 homeobox-leucine zipper transcription f... 26 8.6
At4g11280.1 68417.m01824 1-aminocyclopropane-1-carboxylate synth... 26 8.6
At4g00630.1 68417.m00087 K+ efflux antiporter, putative (KEA2) M... 26 8.6
At3g48280.1 68416.m05269 cytochrome P450, putative nearly identi... 26 8.6
At3g22430.1 68416.m02834 expressed protein 26 8.6
>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)
Length = 317
Score = 153 bits (370), Expect = 4e-38
Identities = 70/117 (59%), Positives = 92/117 (78%)
Frame = +2
Query: 8 AFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDS 187
+FFQ L+IPTKI+KGT+EII V ++K GDKVG+SEA LL L I PFSYGLVV+ VYD+
Sbjct: 139 SFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVESVYDN 198
Query: 188 GTIFAPAILDIKPEDLREKFLAGVANVAALSWSIGYPTVASAPHSIANGFKNLLAIA 358
G++F P +L++ +DL EKF AGV+ + ALS +I YPTVA+APH N +KN+LA+A
Sbjct: 199 GSVFNPEVLNLTEDDLVEKFAAGVSMITALSLAISYPTVAAAPHMFLNAYKNVLAVA 255
>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
similar to 60S acidic ribosomal protein P0 GI:2088654
[Arabidopsis thaliana]
Length = 323
Score = 148 bits (358), Expect = 1e-36
Identities = 66/117 (56%), Positives = 91/117 (77%)
Frame = +2
Query: 8 AFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDS 187
+FFQ L+IPTKI+KGT+EII V ++K GDKVG+SEA LL L I PFSYGLVV+ VYD+
Sbjct: 138 SFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDN 197
Query: 188 GTIFAPAILDIKPEDLREKFLAGVANVAALSWSIGYPTVASAPHSIANGFKNLLAIA 358
G++F+P +LD+ + L EKF +G++ V +L+ ++ YPT+A+APH N +KN LAIA
Sbjct: 198 GSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAYKNALAIA 254
>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
similar to putative 60S acidic ribosomal protein P0
GB:P50346 [Glycine max]
Length = 320
Score = 148 bits (358), Expect = 1e-36
Identities = 66/117 (56%), Positives = 91/117 (77%)
Frame = +2
Query: 8 AFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDS 187
+FFQ L+IPTKI+KGT+EII V ++K GDKVG+SEA LL L I PFSYGLVV+ VYD+
Sbjct: 138 SFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDN 197
Query: 188 GTIFAPAILDIKPEDLREKFLAGVANVAALSWSIGYPTVASAPHSIANGFKNLLAIA 358
G++F+P +LD+ + L EKF +G++ V +L+ ++ YPT+A+APH N +KN LAIA
Sbjct: 198 GSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAYKNALAIA 254
>At1g25260.1 68414.m03134 acidic ribosomal protein P0-related
contains similarity to 60S acidic ribosomal protein
GI:5815233 from [Homo sapiens]
Length = 235
Score = 35.1 bits (77), Expect = 0.014
Identities = 17/81 (20%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Frame = +2
Query: 5 EAFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNML--NISPFSYGLVVKQV 178
E + L +P +++KGT+E++ D + + G ++ A +L +L ++ F L+ +
Sbjct: 151 EPLLRKLEMPVRLNKGTVELVADFVVCEEGKQLSPKSAHILRLLRMKMATFKLNLLCRWS 210
Query: 179 YDSGTIFAPAILDIKPEDLRE 241
++ + ++ EDL +
Sbjct: 211 PSDFELYREDLSELYREDLSD 231
>At1g64255.1 68414.m07280 SWIM zinc finger family protein contains
Pfam profile PF04434: SWIM zinc finger
Length = 750
Score = 33.1 bits (72), Expect = 0.057
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -3
Query: 265 VGHSSKELLAKV-LRLDVENCRREDGTGVVHLFDNKTIRKGRDVQHVEKSSFRS 107
+G SSK + ++L+ E R + GVVHL D+ T+ K HV K S
Sbjct: 131 LGGSSKRQKTDIHVKLERETDRNSESDGVVHLVDSSTLNKDSISGHVSKPCMSS 184
>At5g53150.1 68418.m06607 DNAJ heat shock N-terminal
domain-containing protein low similarity to AHM1
[Triticum aestivum] GI:6691467; contains Pfam profile
PF00226: DnaJ domain
Length = 755
Score = 28.7 bits (61), Expect = 1.2
Identities = 18/80 (22%), Positives = 37/80 (46%)
Frame = +2
Query: 50 GTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPAILDIKPE 229
G ++ +++ G+K A EA +L + PF+ +K+ Y +L + P+
Sbjct: 43 GLKQLFVAINVYISGEKTFAGEADWYGVLGVDPFASDEALKKQY------RKLVLMLHPD 96
Query: 230 DLREKFLAGVANVAALSWSI 289
+ K G N+ A +W++
Sbjct: 97 KNKCKGAEGAFNLVAEAWAL 116
>At5g12430.1 68418.m01461 DNAJ heat shock N-terminal
domain-containing protein similarity to
TETRATRICOPEPTIDE REPEAT PROTEIN 2 , human,
SWISSPROT:TTC2_HUMAN; contains Pfam profiles PF00226:
DnaJ domain, PF00515: TPR Domain
Length = 1165
Score = 28.7 bits (61), Expect = 1.2
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = -1
Query: 204 GAKMVPESYTCLTTRPYEKGEMFNMLRRVASEAPTLSPGFRIWTSLIISIVPFEILVGME 25
G+ PE+Y+ + PYE+ E + R +++ P +P + L+ + EI G E
Sbjct: 372 GSNEAPEAYSPMDISPYEETE---VCREFSADIPPTAPNYLFDAELVAATERMEINEGDE 428
>At1g01790.1 68414.m00098 K+ efflux antiporter, putative (KEA1)
identical to GB:AAD01191 GI:4101473 from [ Arabidopsis
thaliana]; Monovalent cation:proton antiporter family 2
(CPA2 family) member, PMID:11500563
Length = 618
Score = 28.3 bits (60), Expect = 1.6
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 229 GPSREVPCWSGQRGRALVVHRVPDGRVCAS 318
G S ++P + G G V+H++ GR CA+
Sbjct: 459 GRSLDLPVYFGDAGSKEVLHKIGAGRACAA 488
>At3g48290.1 68416.m05270 cytochrome P450, putative very strong
similarity to Cytochrome P450 71A24
(SP:Q9STK9)[Arabidopsis thaliana];
Length = 488
Score = 27.9 bits (59), Expect = 2.1
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 214 ENCRREDGTGVVHLFDNKTIRKGRDVQHVEKS 119
E R+ V+HLF NK +R RDV+ E S
Sbjct: 123 EYWRQMKSVCVLHLFSNKMVRSFRDVRQEEIS 154
>At2g44580.1 68415.m05548 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 624
Score = 26.6 bits (56), Expect = 4.9
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = +2
Query: 206 AILDIKPEDLREKFLAGVANVAALSWSIGYPTVASAPHSIANGFKNLLAI 355
A++D+ +DL +G ++A +WS TV ++ + NG ++L AI
Sbjct: 147 AMMDVDNDDLDH---SGKKDLALYTWSDLVNTVQASDEELRNGLQSLSAI 193
>At1g74790.1 68414.m08665 expressed protein contains similarity to
hedgehog-interacting protein GI:4868122 from [Mus
musculus]
Length = 695
Score = 26.6 bits (56), Expect = 4.9
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 256 SSKELLAKVLRLDVENCRREDGTGVVHLFDNKTIRK 149
+ K LL K++RLDV+N + L+ N +I K
Sbjct: 399 NKKSLLGKIMRLDVDNIPSASEISKMGLWGNYSIPK 434
>At4g15720.1 68417.m02393 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 616
Score = 26.2 bits (55), Expect = 6.5
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 110 SEATLLNMLNISPFSYGLVVKQVYDSGTIFAPAILDI 220
S + L L ++GLV + Y+S T+ A ++LD+
Sbjct: 244 SACSSLGRLQWGKVAHGLVTRGGYESNTVVATSLLDM 280
>At3g48270.1 68416.m05268 cytochrome P450 71A26, putative (CYP71A26)
identical to Cytochrome P450 71A26 (SP:Q9STK7)
{Arabidopsis thaliana}
Length = 489
Score = 26.2 bits (55), Expect = 6.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 214 ENCRREDGTGVVHLFDNKTIRKGRDVQHVEKS 119
E R+ V+HLF NK +R R+V+ E S
Sbjct: 121 EYWRQMKSVCVLHLFSNKMVRSFREVREEEIS 152
>At3g02600.1 68416.m00251 phosphatidic acid phosphatase family
protein / PAP2 family protein similar to phosphatidic
acid phosphatase [Mus musculus] GI:1487873; contains
Pfam profile: PF01569 phosphatase PAP2 superfamily
Length = 364
Score = 26.2 bits (55), Expect = 6.5
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -3
Query: 217 VENCRREDGTGV-VHLFDNKTIRKGRDVQ 134
V N EDG + +HL DN T+R+ DV+
Sbjct: 332 VNNGEEEDGGFMGLHLVDNPTMRREEDVE 360
>At5g59130.1 68418.m07411 subtilase family protein contains
similarity to prepro-cucumisin GI:807698 from [Cucumis
melo]
Length = 732
Score = 25.8 bits (54), Expect = 8.6
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +2
Query: 11 FFQ-ALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDS 187
F+Q A I + S+G I+ D ILKP E N L SPF VK +S
Sbjct: 454 FYQTAPKILSFSSRGPNIIVAD--ILKPDITAPGLEILAANSLRASPFYDTAYVKYSVES 511
Query: 188 GT 193
GT
Sbjct: 512 GT 513
>At5g25590.1 68418.m03045 expressed protein contains Pfam profile
PF04783: Protein of unknown function (DUF630)
Length = 775
Score = 25.8 bits (54), Expect = 8.6
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -3
Query: 166 NKTIRKGRDVQHVEKSSFRSSHLITR-LQDMDIIDNFNSTL*NLSGD 29
N+ ++G + VEK+ SHL TR + DM +D+ S + L D
Sbjct: 447 NRHKKRGASAETVEKTKAAVSHLHTRYIVDMQSMDSTVSEVNRLRDD 493
>At5g12020.1 68418.m01405 17.6 kDa class II heat shock protein
(HSP17.6-CII) identical to 17.6 kDa class II heat shock
protein SP:P29830 from [Arabidopsis thaliana]
Length = 155
Score = 25.8 bits (54), Expect = 8.6
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = -1
Query: 291 PMDHESAATLATPARNFSRRSSGLMSRIAGAKMVPESYTCLTTRPYEKGE 142
P DH + T P+R + R + + + A P +Y + P KG+
Sbjct: 19 PEDHNNEKTRNNPSRVYMRDAKAMAATPADVIEHPNAYAFVVDMPGIKGD 68
>At4g32880.1 68417.m04679 homeobox-leucine zipper transcription
factor (HB-8) identical to HD-zip transcription factor
(athb-8) (GI:7270235) [Arabidopsis thaliana]
Length = 833
Score = 25.8 bits (54), Expect = 8.6
Identities = 12/48 (25%), Positives = 29/48 (60%)
Frame = +2
Query: 59 EIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFA 202
EI+ ++++P + G S +++ ++ P+S V++ +Y+S T+ A
Sbjct: 309 EILPSGYLIRPCEG-GGSILHIVDHFDLEPWSVPEVLRSLYESSTLLA 355
>At4g11280.1 68417.m01824 1-aminocyclopropane-1-carboxylate synthase
6 / ACC synthase 6 (ACS6) identical to GI:3746125
Length = 495
Score = 25.8 bits (54), Expect = 8.6
Identities = 11/44 (25%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -3
Query: 187 GVVHLFDNKTIRKGRDVQHVEKSSFRSSHLITR-LQDMDIIDNF 59
G+V+ ++++ ++ R + S ++ HLI + L D + +D F
Sbjct: 290 GIVYSYNDRVVQIARKMSSFGLVSSQTQHLIAKMLSDEEFVDEF 333
>At4g00630.1 68417.m00087 K+ efflux antiporter, putative (KEA2)
Monovalent cation:proton antiporter family 2 (CPA2
family) member, PMID:11500563; similar to
SWISS-PROT:SPP03819 Glutathione-regulated
potassium-efflux system protein kefC (K(+)/H(+)
antiporter) [Escherichia coli]
Length = 627
Score = 25.8 bits (54), Expect = 8.6
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 208 NSRHQAGGPSREVPCWSGQRGRALVVHRVPDGRVCAS 318
+S A G S ++P + G G V+H++ R CA+
Sbjct: 460 SSDRVAIGRSLDLPVYFGDAGSREVLHKIGADRACAA 496
>At3g48280.1 68416.m05269 cytochrome P450, putative nearly identical
to cytochrome P450 71A25 (SP:Q9STK8) [Arabidopsis
thaliana];
Length = 490
Score = 25.8 bits (54), Expect = 8.6
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 214 ENCRREDGTGVVHLFDNKTIRKGRDVQHVE 125
E R+ V+HL NK +R RDV+ E
Sbjct: 120 EYWRQMKSVCVIHLLSNKMVRSFRDVREEE 149
>At3g22430.1 68416.m02834 expressed protein
Length = 342
Score = 25.8 bits (54), Expect = 8.6
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 178 VRLRYHLRAGNSRHQAGG 231
VR H+R G+SRH GG
Sbjct: 228 VRAAKHMRVGSSRHDNGG 245
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,116,582
Number of Sequences: 28952
Number of extensions: 156098
Number of successful extensions: 499
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 467982008
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -