Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_O03
         (461 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protei...    21   4.2  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   5.6  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           21   5.6  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    21   5.6  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    20   9.7  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    20   9.7  

>L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protein
           protein.
          Length = 46

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 273 WILAGRPTTHSGE 235
           W+L G   TH+GE
Sbjct: 21  WLLQGHIRTHTGE 33


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 393 VLSYIFDDLVCYE**EEHLARARPV 319
           V++YI D LV  E   EHL   R V
Sbjct: 454 VVNYIDDLLVASETLNEHLEHLRQV 478


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 366 QDRRKYNSAPEQRQ 407
           Q+ R YN++P+Q Q
Sbjct: 172 QENRYYNNSPDQYQ 185


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 377 STILSVMNNKRSTLRVQGQFRN 312
           STILSV+    + L +  QFRN
Sbjct: 331 STILSVLGTACTFLIIIVQFRN 352


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -2

Query: 415 GRCCRCSGAELY 380
           GRCC+    +LY
Sbjct: 102 GRCCKTCPGDLY 113


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 261 PLISMTGRAPPQSRNNPVS 317
           P  S  G+  PQ  N+PVS
Sbjct: 30  PDASTLGQFSPQGPNSPVS 48


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,957
Number of Sequences: 336
Number of extensions: 2048
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10616413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)