Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_O03
         (461 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5H10.01 |||DUF1445 family protein|Schizosaccharomyces pombe|...    25   4.3  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   4.3  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    25   4.3  
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    25   5.6  
SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb...    24   9.8  

>SPAC5H10.01 |||DUF1445 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 301

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = -3

Query: 261 GRPTTHSGEALHKADNKAAGNPHQCWY 181
           G+PT    EAL K  N A   P  C Y
Sbjct: 104 GKPTEFKPEALAKQSNVATDIPFYCEY 130


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 63   NFYRDSESNYLEYGLNCSSNVMSPGERVAHGRREPARPPYTNT 191
            N Y+    +Y+ YGL+ S  + +  E+     R P+ PP  +T
Sbjct: 1702 NLYKTILKHYVHYGLSTSVPLYTSLEKHNLISRSPSSPPPIHT 1744


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = -3

Query: 342 HLARARPV*KRDYSETVVVHAPSWILAGRPTTHSGEALHKADNKAAGNPH 193
           HL    P     +     +H+P++ L+  P + S  A H+  N    +PH
Sbjct: 75  HLPSTPPTVDIPFHHPHTIHSPTFTLSVSPDSQSSSATHQ--NDYISSPH 122


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 360 NRQDRRKYNSAPEQRQHRPHVNTEN 434
           +R+ RR+Y  AP     +PH +  N
Sbjct: 475 SREWRRRYRVAPPAENEKPHTSRTN 499


>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 202 KPAPVLVYGGRAGSRRPW 149
           K  PVL++ G  GS+R W
Sbjct: 19  KHPPVLIFHGLLGSKRNW 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,760,864
Number of Sequences: 5004
Number of extensions: 32408
Number of successful extensions: 100
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)