Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_O03
(461 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0202 - 26339467-26339494,26339579-26339624,26339742-263397... 31 0.60
03_05_0310 + 23008915-23009841,23010401-23011162 29 1.8
06_03_0576 - 22443668-22444146,22446239-22446393,22447251-224473... 29 2.4
05_01_0455 - 3614011-3614503,3615007-3615072,3615154-3615347,361... 29 2.4
08_02_1453 - 27199228-27200579,27200712-27202646,27202905-272029... 28 4.2
08_01_0281 - 2290348-2290637,2290846-2291032 28 4.2
03_02_0874 + 12017069-12018051,12018137-12018316,12018421-120186... 28 4.2
04_04_0979 - 29862280-29862444,29862718-29862999,29863831-298639... 27 7.3
03_05_0706 + 27008675-27010063 27 7.3
03_01_0239 + 1859446-1860112,1861218-1861338,1861431-1861618,186... 27 9.7
>05_06_0202 -
26339467-26339494,26339579-26339624,26339742-26339785,
26340729-26340851,26341010-26341124,26341447-26342207,
26342305-26342711,26342798-26342900,26344642-26345144
Length = 709
Score = 30.7 bits (66), Expect = 0.60
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +3
Query: 246 AWLGAPLISMTGRAPPQSRNNPVSKLALHAQGAPLIIHNRQDRRKYNSAPEQRQHRPHVN 425
A G+P I++ G P++ + S ++L A + +++ N QRQH+P
Sbjct: 643 ATYGSPYITVDGSYYPRTSEHASSSVSLREPSASSQLKSQEITEALNDELSQRQHKPRRY 702
Query: 426 TE-NF 437
+E NF
Sbjct: 703 SEMNF 707
>03_05_0310 + 23008915-23009841,23010401-23011162
Length = 562
Score = 29.1 bits (62), Expect = 1.8
Identities = 23/107 (21%), Positives = 37/107 (34%)
Frame = +3
Query: 135 GERVAHGRREPARPPYTNTGAGFXXXXXXXXXXXXXNAWLGAPLISMTGRAPPQSRNNPV 314
G+ V H P P T G F L PL++ +SR+ P
Sbjct: 411 GDEVLHKYTTPTATPSTPKGERFRIQGVRTPGGGYGKGLL-RPLMASEKEGAAESRSPPP 469
Query: 315 SKLALHAQGAPLIIHNRQDRRKYNSAPEQRQHRPHVNTENFPRDRCE 455
K+ LH P++ Q + +PE H+ + ++ E
Sbjct: 470 IKVKLHLTPPPIVRAPGQFQEDEVKSPEPSIHKLAAQVKKLCKENIE 516
>06_03_0576 -
22443668-22444146,22446239-22446393,22447251-22447331,
22448475-22448618,22449670-22449695,22449748-22449811,
22449905-22449996,22450550-22450780,22451238-22451678,
22451754-22452293
Length = 750
Score = 28.7 bits (61), Expect = 2.4
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = -2
Query: 412 RCCRCSG-AELYFRRSCLL*IIRG 344
RCCRCS A LY ++ C+L + G
Sbjct: 488 RCCRCSARAVLYSKKRCMLAYLAG 511
>05_01_0455 -
3614011-3614503,3615007-3615072,3615154-3615347,
3615562-3615657,3615790-3615829,3616729-3616856
Length = 338
Score = 28.7 bits (61), Expect = 2.4
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +3
Query: 282 RAPPQSRNNPVSKLALHAQGAPLIIHNRQDRRKYNSAPEQRQHRPHVNTENFPR 443
R+P ++ P S H +H+R+D R Y+ +P +R P + PR
Sbjct: 168 RSPSYGKSGPPSHWGSHGADREERLHSRRDGRGYSRSP-RRHDSPSNQRNHSPR 220
>08_02_1453 - 27199228-27200579,27200712-27202646,27202905-27202966,
27203525-27203545,27204305-27204344,27204345-27204792,
27204866-27204964,27205071-27205394,27205446-27205574,
27205657-27205875,27205976-27206194,27206436-27206669,
27206773-27206943,27207466-27207577,27207955-27208010,
27208083-27208181,27208901-27209134,27209258-27209311,
27209363-27209422
Length = 1955
Score = 27.9 bits (59), Expect = 4.2
Identities = 14/48 (29%), Positives = 20/48 (41%)
Frame = -2
Query: 433 FSVLTCGRCCRCSGAELYFRRSCLL*IIRGAPCACKASLETGLFRDCG 290
FS CC C+ + S LL ++RG +L + R CG
Sbjct: 858 FSKTENASCCDCNAVQRNMAESLLLPVVRGVAGKAADALVQSVTRMCG 905
>08_01_0281 - 2290348-2290637,2290846-2291032
Length = 158
Score = 27.9 bits (59), Expect = 4.2
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +3
Query: 249 WLGAPLISMTGRAPPQSRNNPVSKLALHAQGAPLIIHNRQDRRKYNSAPEQRQHRP 416
WLGA ++ G A S +PV L L + R+ RR+++ P Q H P
Sbjct: 52 WLGANVL--LGDAAAMSSRHPVHSTELLRVDYRLGLGQRRPRRQHHGRPWQAIHPP 105
>03_02_0874 +
12017069-12018051,12018137-12018316,12018421-12018600,
12018718-12018797,12018999-12019259,12019360-12019474,
12019631-12019855,12020840-12020849
Length = 677
Score = 27.9 bits (59), Expect = 4.2
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -3
Query: 120 SKSSLTH-IQDNSIHCHGKSSEEAEMS*SYTNIGVVASTSC 1
S SL H + D+ KSS A S + T+ GVVA++SC
Sbjct: 597 SDQSLEHNLPDSPFASPTKSSVSAHQSFTTTDTGVVATSSC 637
>04_04_0979 -
29862280-29862444,29862718-29862999,29863831-29863929,
29864037-29864366
Length = 291
Score = 27.1 bits (57), Expect = 7.3
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = -2
Query: 163 SRRPWATRSPGLITFEEQFNPYSR--*FDSLSR*KFGRG 53
S PW R+P + F +FNP S FDS S G G
Sbjct: 179 SNLPWKARAPNMKEFFSKFNPLSAKVVFDSPSGKSAGYG 217
>03_05_0706 + 27008675-27010063
Length = 462
Score = 27.1 bits (57), Expect = 7.3
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Frame = -3
Query: 336 ARARPV*KRDYSETVVVHA----PSWILAGRPTTHSGEALHKA 220
AR RP RDY +V+ A + L RP+ H+ E +H+A
Sbjct: 311 ARMRPPVPRDYFGNLVLWAFPRCDAGELVARPSHHAAELIHRA 353
>03_01_0239 +
1859446-1860112,1861218-1861338,1861431-1861618,
1861710-1861804
Length = 356
Score = 26.6 bits (56), Expect = 9.7
Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Frame = -2
Query: 421 TCGRCCRCSGAELYFRRSCLL*IIRGAPCA--CKASLETGLFRDCGGARPVMDISGAPN 251
T G C RCS + ++ +C +G P C +L+ G G SG N
Sbjct: 248 TAGNCIRCSCSSTTYQLNCTAVQNKGCPSVPLCNGTLKLGETNGTGCGSTTCAYSGYSN 306
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,329,014
Number of Sequences: 37544
Number of extensions: 254622
Number of successful extensions: 655
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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