Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_O03
         (461 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16649| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_37043| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00036)           29   2.5  
SB_15794| Best HMM Match : DUF1605 (HMM E-Value=5.9e-12)               28   3.3  
SB_59775| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3e-08)             27   7.6  
SB_37375| Best HMM Match : EMI (HMM E-Value=6.7)                       27   7.6  
SB_31694| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_57048| Best HMM Match : S-antigen (HMM E-Value=3.4)                 27   10.0 
SB_58314| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.8e-36)         27   10.0 
SB_17933| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   10.0 

>SB_16649| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 483

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +3

Query: 285 APPQSRNNPVSKLALHAQGAPLIIHNRQDRRKYNSAPEQRQHRPHVNT 428
           A P S   PV +L   A G+P I         +N+APE  + + +  T
Sbjct: 75  AKPSSPETPVVELKTAADGSPFISIPTSVLLSHNAAPENAEDKSNTRT 122


>SB_37043| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00036)
          Length = 1336

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -3

Query: 99   IQDNSIHCHGKSSEEAEMS*SYTNIGVVASTSC 1
            + D+ +  H K SEE + +  YT++ + A T+C
Sbjct: 1147 VNDDMLQVHYKMSEEFQRAKPYTSVVIAAVTTC 1179


>SB_15794| Best HMM Match : DUF1605 (HMM E-Value=5.9e-12)
          Length = 655

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +3

Query: 288 PPQSRNNPVSKLALHAQGAPLIIHNRQDRRKYNSAPEQRQHRP-HVNTENFPRDR 449
           P Q R  P  +  ++ +  P     R +R      P+QR+ RP  +N E +P+ R
Sbjct: 460 PKQRRARPAEEERINPELYPKQRRARPERINQEFYPKQRRARPERINPELYPKQR 514


>SB_59775| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3e-08)
          Length = 1381

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -3

Query: 99   IQDNSIHCHGKSSEEAEMS*SYTNIGVVASTSC 1
            + D+ +  H K SEE + +  +T++ V A T+C
Sbjct: 1192 VNDDMLQVHYKMSEEFQRAKPHTSVVVAAVTTC 1224


>SB_37375| Best HMM Match : EMI (HMM E-Value=6.7)
          Length = 353

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -3

Query: 99  IQDNSIHCHGKSSEEAEMS*SYTNIGVVASTSC 1
           + D+ +  H K SEE + +  +T++ V A T+C
Sbjct: 164 VNDDLLQVHYKMSEEFQQAKPHTSVVVAAFTTC 196


>SB_31694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 288

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 2   HEVDATTPMLVYDYDISASSEL 67
           H+ D +T  L+YDYD S +S L
Sbjct: 142 HDYDTSTNSLLYDYDTSMNSLL 163


>SB_57048| Best HMM Match : S-antigen (HMM E-Value=3.4)
          Length = 242

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 366 QDRRKYNSAPEQRQHRPHVNTENFP 440
           Q + + N+ P Q QHRPH +    P
Sbjct: 160 QTQHRPNTDPTQTQHRPHTDPTQTP 184


>SB_58314| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.8e-36)
          Length = 444

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 60  PNFYRDSESNYLEYGLNCSSNVMSPGE 140
           PNF+++ ++   E GLN     +SPG+
Sbjct: 334 PNFWKEKDNVDAEIGLNSVGKKLSPGK 360


>SB_17933| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 94

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 375 RKYNSAPEQRQHRPHVNTE 431
           R ++ AP+QR+HRP + T+
Sbjct: 75  RDFSRAPQQRRHRPLMKTD 93


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,943,478
Number of Sequences: 59808
Number of extensions: 277448
Number of successful extensions: 877
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 945255773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)