Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_O03
         (461 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81094-5|CAB03149.2|  675|Caenorhabditis elegans Hypothetical pr...    29   1.2  
AF536544-1|AAN77185.1|  675|Caenorhabditis elegans SR-related CT...    29   1.2  
U64601-8|AAB04576.2|  413|Caenorhabditis elegans Hypothetical pr...    29   1.6  
AF125459-6|AAN60503.1|  219|Caenorhabditis elegans Hypothetical ...    27   4.9  
AF125459-5|AAD12844.1|  345|Caenorhabditis elegans Hypothetical ...    27   4.9  

>Z81094-5|CAB03149.2|  675|Caenorhabditis elegans Hypothetical
           protein F58G11.5 protein.
          Length = 675

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 300 RNNPVSKLALHAQGAPLIIHNRQDRRKYNSAPEQRQHRPHVNTEN 434
           R+ P S  A H   APL   +   R +++ AP+    RPH +  N
Sbjct: 298 RHGPSSGPASHHPNAPL---SNMRRSRFDQAPKHSAERPHASVSN 339


>AF536544-1|AAN77185.1|  675|Caenorhabditis elegans SR-related CTD
           associated factor 6 protein.
          Length = 675

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 300 RNNPVSKLALHAQGAPLIIHNRQDRRKYNSAPEQRQHRPHVNTEN 434
           R+ P S  A H   APL   +   R +++ AP+    RPH +  N
Sbjct: 298 RHGPSSGPASHHPNAPL---SNMRRSRFDQAPKHSAERPHASVSN 339


>U64601-8|AAB04576.2|  413|Caenorhabditis elegans Hypothetical
           protein M03F4.6 protein.
          Length = 413

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 17/46 (36%), Positives = 18/46 (39%)
 Frame = -2

Query: 430 SVLTCGRCCRCSGAELYFRRSCLL*IIRGAPCACKASLETGLFRDC 293
           S L C R CR     LY    CL    RG PC      E G+   C
Sbjct: 261 SSLCCPRPCR-DPTPLYVNGQCLSIAHRGDPCQIDQQCEGGITMSC 305


>AF125459-6|AAN60503.1|  219|Caenorhabditis elegans Hypothetical
           protein Y25C1A.8b protein.
          Length = 219

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 366 QDRRKYNSAPEQRQHRPHVNTENFPRDR 449
           +DRRK +    +R    H    N PRDR
Sbjct: 125 KDRRKMHKTSRERDRESHRKRSNSPRDR 152


>AF125459-5|AAD12844.1|  345|Caenorhabditis elegans Hypothetical
           protein Y25C1A.8a protein.
          Length = 345

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 366 QDRRKYNSAPEQRQHRPHVNTENFPRDR 449
           +DRRK +    +R    H    N PRDR
Sbjct: 251 KDRRKMHKTSRERDRESHRKRSNSPRDR 278


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,966,238
Number of Sequences: 27780
Number of extensions: 198189
Number of successful extensions: 456
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)