Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_O03
         (461 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g12700.1 68417.m01994 expressed protein                             29   2.0  
At1g01420.1 68414.m00057 UDP-glucoronosyl/UDP-glucosyl transfera...    27   8.2  

>At4g12700.1 68417.m01994 expressed protein
          Length = 561

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +3

Query: 66  FYRDSESNYLEYGLNCSSNVMSPGE-RVAHGRREPARPPYTNTGAG 200
           FY+D     +E   NCS +VM  GE       R+  RP + N+  G
Sbjct: 179 FYKDYRRFVIEKSGNCSVSVMGIGEYHSGVNARKRKRPGFRNSSGG 224


>At1g01420.1 68414.m00057 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 481

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -2

Query: 169 AGSRRPWATRSPGLITFEEQFNPYSR 92
           +G R  W  RSP  I     FNP SR
Sbjct: 296 SGKRFLWVIRSPSGIASSSYFNPQSR 321


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,364,382
Number of Sequences: 28952
Number of extensions: 180389
Number of successful extensions: 434
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 772134480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)