Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_O02
         (394 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)                     25   0.38 
SB_52883| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_33042| Best HMM Match : E-MAP-115 (HMM E-Value=2.8)                 27   7.2  

>SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)
          Length = 193

 Score = 25.0 bits (52), Expect(2) = 0.38
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 31  SQRPSPHRHLARQH 72
           S  PS HRH+ RQH
Sbjct: 83  SSSPSTHRHIHRQH 96



 Score = 24.6 bits (51), Expect(2) = 0.38
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 19 IVSRSQRPSPHRH 57
          I S S+ PSPHRH
Sbjct: 33 ITSSSESPSPHRH 45


>SB_52883| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1434

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -1

Query: 190  MGGTTPEHHKHLAA-IANPLMND 125
            +GG TPEHH  +A  +A  LM+D
Sbjct: 1356 VGGLTPEHHSAIATKLALDLMDD 1378


>SB_33042| Best HMM Match : E-MAP-115 (HMM E-Value=2.8)
          Length = 249

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -1

Query: 190 MGGTTPEHHKHLAA-IANPLMND 125
           +GG TPEHH  +A  +A  LM+D
Sbjct: 110 VGGLTPEHHSAIATKLALDLMDD 132


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,717,316
Number of Sequences: 59808
Number of extensions: 179781
Number of successful extensions: 338
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 337
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 678472135
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)