Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_O02
         (394 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83744-4|CAB06040.4|  735|Caenorhabditis elegans Hypothetical pr...    28   2.1  
U29097-1|AAA68411.1| 1490|Caenorhabditis elegans Hypothetical pr...    26   8.4  
AC024796-10|AAK29896.1|  623|Caenorhabditis elegans Hypothetical...    26   8.4  

>Z83744-4|CAB06040.4|  735|Caenorhabditis elegans Hypothetical
           protein C06A12.4 protein.
          Length = 735

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +3

Query: 129 FIRGLAIAARCLWCSGVVPPIPWFIP*SLFKIMYI*ECNLTREAT 263
           F R   I A C WCS  +     F P  +  I+YI   +L+R+ T
Sbjct: 72  FFRCFTIVAWCGWCSNYI-----FFPCLMNAILYIISLSLSRDTT 111


>U29097-1|AAA68411.1| 1490|Caenorhabditis elegans Hypothetical
           protein F18C5.3 protein.
          Length = 1490

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 293 LITKLSQNLTRGFSC*VAFLNVHNFKKRLRD 201
           +IT++S  +T+GF   VA  +VH     +R+
Sbjct: 672 VITEISLTMTKGFQVHVAIFSVHTLIVAMRE 702


>AC024796-10|AAK29896.1|  623|Caenorhabditis elegans Hypothetical
           protein Y48G1C.7 protein.
          Length = 623

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 123 VSFIRGLAIAARCLWCSGVVP 185
           V FI GL + AR L C G+VP
Sbjct: 164 VFFIDGLEVDARNLTCDGLVP 184


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,775,904
Number of Sequences: 27780
Number of extensions: 135365
Number of successful extensions: 296
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)