Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_O02
         (394 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g20780.1 68414.m02602 armadillo/beta-catenin repeat protein-r...    27   4.5  
At4g24290.2 68417.m03488 expressed protein                             27   6.0  
At1g15490.1 68414.m01864 hydrolase, alpha/beta fold family prote...    26   7.9  

>At1g20780.1 68414.m02602 armadillo/beta-catenin repeat
           protein-related / U-box domain-containing protein low
           similarity to immediate-early fungal elicitor protein
           CMPG1 [Petroselinum crispum] GI:14582200; contains Pfam
           profile PF04564: U-box domain
          Length = 801

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 122 CVVHKGVSNRSQVFVVLRGGAAHPLV 199
           C +H+G+ +  + F ++ GGA   LV
Sbjct: 653 CKIHQGICSLRETFCLVEGGAVEKLV 678


>At4g24290.2 68417.m03488 expressed protein
          Length = 606

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = -1

Query: 193 GMGGTTPEHHKHLAAIANPLMNDTLTNRPLVPGGPAVP 80
           G+  T   HH   A    P   D   N  + PGGP VP
Sbjct: 505 GLISTLISHHFTAAQKPPPRPADVNINSAIYPGGPPVP 542


>At1g15490.1 68414.m01864 hydrolase, alpha/beta fold family protein
           Contains PF 00561 alpha/beta hydrolase fold
          Length = 648

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 181 TTPEHHKHLAAIANPLMNDTLTNRPLVPGGPAVP 80
           T  +HH H  +  N L N++  + PL+ G P  P
Sbjct: 301 TKSQHHHHHRSY-NSLFNNSSLHDPLLDGSPTSP 333


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,344,339
Number of Sequences: 28952
Number of extensions: 122789
Number of successful extensions: 260
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 567552648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)