Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_O01
         (467 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)         104   4e-23
SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)              96   1e-20
SB_17985| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_25925| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0)                 28   4.4  
SB_15354| Best HMM Match : NHL (HMM E-Value=4.4e-14)                   28   4.4  
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)                    28   4.4  
SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)                     27   5.9  
SB_25649| Best HMM Match : Trypsin (HMM E-Value=0)                     27   5.9  
SB_50009| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  

>SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)
          Length = 113

 Score =  104 bits (249), Expect = 4e-23
 Identities = 44/73 (60%), Positives = 53/73 (72%)
 Frame = +3

Query: 249 VAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYTGAT 428
           +AY+++EGD I+CAAY+HELPRYG+KVGLTNYAAAYCTG               +YTG  
Sbjct: 1   IAYAKLEGDVIICAAYAHELPRYGVKVGLTNYAAAYCTGLLLARRLLTKLNLHEIYTGTE 60

Query: 429 EVTGDEYNVEPVD 467
           EV GDEYNVE +D
Sbjct: 61  EVNGDEYNVESID 73


>SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)
          Length = 328

 Score = 95.9 bits (228), Expect = 1e-20
 Identities = 60/152 (39%), Positives = 79/152 (51%), Gaps = 37/152 (24%)
 Frame = +3

Query: 123 RRREGKTDYYARKR------------------------LVVQDKNKYNTP------KYRL 212
           RR +GKTDYYARKR                        ++ Q++NK   P      KYR 
Sbjct: 17  RRSQGKTDYYARKRLITQDKNKYNTPKYRFVVRITNKDIICQERNKVGGPIFGSTQKYRR 76

Query: 213 IVRLS-NK------DVTCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXX 371
             R   NK          ++AY++++GD ++ +AY+HELP +G+KVGLTNYAAAYCTG  
Sbjct: 77  NSRGKYNKRNIFILQTYARIAYAKLDGDRVLASAYAHELPNFGVKVGLTNYAAAYCTGLL 136

Query: 372 XXXXXXXXXXXDSLYTGATEVTGDEYNVEPVD 467
                        +YTG  +V GDEYNVE VD
Sbjct: 137 LARRLLTMLNLHEIYTGTDDVNGDEYNVESVD 168


>SB_17985| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 818

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/71 (22%), Positives = 37/71 (52%)
 Frame = +3

Query: 72  KVVKNKQYFKRYQVKFQRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQV 251
           K +K+ Q+     V+FQ  +E + D + R + ++QD N   T +  ++++  N+    ++
Sbjct: 400 KTMKSMQFKNEELVRFQYNQEDQVDDFKRLKKLIQD-NGLPTIEQVIVLQRQNESYREEL 458

Query: 252 AYSRIEGDHIV 284
              R E + ++
Sbjct: 459 MNERKEKERLL 469


>SB_25925| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 415

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = +1

Query: 178 IKTNTTLQSTD*LYGYPIKMLPV-KLHTHALRVITLSVLPTLMNSHAMVSRWV*LTMLLP 354
           IK NT  ++T  L  + ++  PV K H    R + L    TL+N+   V+ W+   +LL 
Sbjct: 333 IKGNTISENT--LSTFRVRNTPVSKQHDDINRALFLE--STLLNTFQNVALWLQKFLLLK 388

Query: 355 TALVC 369
            A+VC
Sbjct: 389 PAMVC 393


>SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +3

Query: 210 LIVRLSNKDVTCQVAYSRIEGD-HIVC 287
           L++ LS +D+TC V YS   G+ H +C
Sbjct: 108 LLLYLSKRDITCPVPYSSRNGELHTMC 134


>SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1433

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = -1

Query: 386 QSSCQQQTSAVGSSIVSQTHLD--TIAWEFMRVGSTDNVITLNA*VCNLTGNIFI 228
           Q  C   T+  GS IV+   +D   +  E  R+G + NV  L   V  LTG + I
Sbjct: 378 QCLCDHLTAFGGSMIVAPNPIDFNKVFLEMSRLGESGNVAVLATIVSILTGYLVI 432


>SB_15354| Best HMM Match : NHL (HMM E-Value=4.4e-14)
          Length = 1071

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -1

Query: 434 DFSGTCVETVQAEP-LQQSSCQQQTSAVGSSIVSQTHLDTIAWE 306
           D++G C +T    P L  S C Q+   +GSS    ++   ++ E
Sbjct: 665 DYAGCCPDTYINTPCLHNSGCDQELGVLGSSCSDNSYTQLLSKE 708


>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3160

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +3

Query: 258 SRIEGDHIVCAAYSH-ELPRYGIKVGLTNYAAAY 356
           ++  GDH+  A+YSH ++ R+ + + L    AAY
Sbjct: 133 AKYRGDHLDIASYSHQQIDRFAVLLDLWTNEAAY 166


>SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)
          Length = 1952

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 63   GFVKVVKNKQYFKRYQVKFQRRREGKTDY 149
            GF++ +K +    RY VK  R R    DY
Sbjct: 1090 GFIEALKRRDVSSRYNVKHARFRRATNDY 1118


>SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 657

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 216 VRLSNKDVTCQVAYSRIEGDHIVCAAY 296
           VRL ++D TC  +YS I  +  +CA Y
Sbjct: 405 VRLVSRD-TCNASYSGIINERYICAGY 430


>SB_25649| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 718

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 216 VRLSNKDVTCQVAYSRIEGDHIVCAAY 296
           VRL ++D TC  +YS I  +  +CA Y
Sbjct: 690 VRLVSRD-TCNASYSGIINERYICAGY 715


>SB_50009| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 149

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
 Frame = +3

Query: 57  KMGFVKVVKNKQYFKRYQVKFQRRREGKTDYYARKRLVVQD-KNKYNTP--KYRLIVR-- 221
           ++ F K  K   Y +  Q + + R EGK+  +  +R+  +   N  N P  K  + V   
Sbjct: 40  RVTFGKHFKGSLYIESTQRQKEERTEGKSAKHKDERVGKRCILNGLNVPQCKNSIYVNYE 99

Query: 222 -LSNKDVTCQVAYSRIEGDHIV 284
            LS K++TC   +   +GD ++
Sbjct: 100 LLSQKEITCPYTFPEGDGDILI 121


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,890,912
Number of Sequences: 59808
Number of extensions: 309522
Number of successful extensions: 758
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 969807871
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)