Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_O01
(467 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB208980-1|BAD92217.1| 303|Homo sapiens ribosomal protein L5 va... 231 7e-61
BC132972-1|AAI32973.1| 297|Homo sapiens ribosomal protein L5 pr... 229 4e-60
BC132970-1|AAI32971.1| 297|Homo sapiens ribosomal protein L5 pr... 229 4e-60
BC109370-1|AAI09371.1| 297|Homo sapiens ribosomal protein L5 pr... 229 4e-60
AL162740-1|CAI22505.1| 297|Homo sapiens ribosomal protein L5 pr... 229 4e-60
AK222604-1|BAD96324.1| 297|Homo sapiens ribosomal protein L5 va... 229 4e-60
U14966-1|AAA85654.1| 297|Homo sapiens ribosomal protein L5 prot... 227 1e-59
BC001882-1|AAH01882.1| 101|Homo sapiens RPL5 protein protein. 191 1e-48
AL162740-2|CAI22506.1| 126|Homo sapiens ribosomal protein L5 pr... 126 3e-29
>AB208980-1|BAD92217.1| 303|Homo sapiens ribosomal protein L5
variant protein.
Length = 303
Score = 231 bits (566), Expect = 7e-61
Identities = 102/140 (72%), Positives = 118/140 (84%)
Frame = +3
Query: 48 IF*KMGFVKVVKNKQYFKRYQVKFQRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLS 227
+F +MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++
Sbjct: 4 LFRRMGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVT 63
Query: 228 NKDVTCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXD 407
N+D+ CQ+AY+RIEGD IVCAAY+HELP+YG+KVGLTNYAAAYCTG D
Sbjct: 64 NRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMD 123
Query: 408 SLYTGATEVTGDEYNVEPVD 467
+Y G EVTGDEYNVE +D
Sbjct: 124 KIYEGQVEVTGDEYNVESID 143
>BC132972-1|AAI32973.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 229 bits (560), Expect = 4e-60
Identities = 101/136 (74%), Positives = 115/136 (84%)
Frame = +3
Query: 60 MGFVKVVKNKQYFKRYQVKFQRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 239
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 240 TCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYT 419
CQ+AY+RIEGD IVCAAY+HELP+YG+KVGLTNYAAAYCTG D +Y
Sbjct: 61 ICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYE 120
Query: 420 GATEVTGDEYNVEPVD 467
G EVTGDEYNVE +D
Sbjct: 121 GQVEVTGDEYNVESID 136
>BC132970-1|AAI32971.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 229 bits (560), Expect = 4e-60
Identities = 101/136 (74%), Positives = 115/136 (84%)
Frame = +3
Query: 60 MGFVKVVKNKQYFKRYQVKFQRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 239
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 240 TCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYT 419
CQ+AY+RIEGD IVCAAY+HELP+YG+KVGLTNYAAAYCTG D +Y
Sbjct: 61 ICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYE 120
Query: 420 GATEVTGDEYNVEPVD 467
G EVTGDEYNVE +D
Sbjct: 121 GQVEVTGDEYNVESID 136
>BC109370-1|AAI09371.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 229 bits (560), Expect = 4e-60
Identities = 101/136 (74%), Positives = 115/136 (84%)
Frame = +3
Query: 60 MGFVKVVKNKQYFKRYQVKFQRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 239
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 240 TCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYT 419
CQ+AY+RIEGD IVCAAY+HELP+YG+KVGLTNYAAAYCTG D +Y
Sbjct: 61 ICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYE 120
Query: 420 GATEVTGDEYNVEPVD 467
G EVTGDEYNVE +D
Sbjct: 121 GQVEVTGDEYNVESID 136
>AL162740-1|CAI22505.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 229 bits (560), Expect = 4e-60
Identities = 101/136 (74%), Positives = 115/136 (84%)
Frame = +3
Query: 60 MGFVKVVKNKQYFKRYQVKFQRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 239
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 240 TCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYT 419
CQ+AY+RIEGD IVCAAY+HELP+YG+KVGLTNYAAAYCTG D +Y
Sbjct: 61 ICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYE 120
Query: 420 GATEVTGDEYNVEPVD 467
G EVTGDEYNVE +D
Sbjct: 121 GQVEVTGDEYNVESID 136
>AK222604-1|BAD96324.1| 297|Homo sapiens ribosomal protein L5
variant protein.
Length = 297
Score = 229 bits (560), Expect = 4e-60
Identities = 101/136 (74%), Positives = 115/136 (84%)
Frame = +3
Query: 60 MGFVKVVKNKQYFKRYQVKFQRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 239
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 240 TCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYT 419
CQ+AY+RIEGD IVCAAY+HELP+YG+KVGLTNYAAAYCTG D +Y
Sbjct: 61 ICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYE 120
Query: 420 GATEVTGDEYNVEPVD 467
G EVTGDEYNVE +D
Sbjct: 121 GQVEVTGDEYNVESID 136
>U14966-1|AAA85654.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 227 bits (555), Expect = 1e-59
Identities = 100/136 (73%), Positives = 114/136 (83%)
Frame = +3
Query: 60 MGFVKVVKNKQYFKRYQVKFQRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 239
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 240 TCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYT 419
CQ+AY+RIEGD IVCA Y+HELP+YG+KVGLTNYAAAYCTG D +Y
Sbjct: 61 ICQIAYARIEGDMIVCARYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYE 120
Query: 420 GATEVTGDEYNVEPVD 467
G EVTGDEYNVE +D
Sbjct: 121 GQVEVTGDEYNVESID 136
>BC001882-1|AAH01882.1| 101|Homo sapiens RPL5 protein protein.
Length = 101
Score = 191 bits (465), Expect = 1e-48
Identities = 83/98 (84%), Positives = 95/98 (96%)
Frame = +3
Query: 60 MGFVKVVKNKQYFKRYQVKFQRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 239
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 240 TCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAA 353
CQ+AY+RIEGD IVCAAY+HELP+YG+KVGLTNYAAA
Sbjct: 61 ICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAA 98
>AL162740-2|CAI22506.1| 126|Homo sapiens ribosomal protein L5
protein.
Length = 126
Score = 126 bits (305), Expect = 3e-29
Identities = 54/86 (62%), Positives = 66/86 (76%)
Frame = +3
Query: 210 LIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXX 389
+IVR++N+D+ CQ+AY+RIEGD IVCAAY+HELP+YG+KVGLTNYAAAYCTG
Sbjct: 1 MIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLL 60
Query: 390 XXXXXDSLYTGATEVTGDEYNVEPVD 467
D +Y G EVTGDEYNVE +D
Sbjct: 61 NRFGMDKIYEGQVEVTGDEYNVESID 86
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,940,781
Number of Sequences: 237096
Number of extensions: 1434810
Number of successful extensions: 7264
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7264
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4042952858
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -