Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_O01
(467 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S... 173 5e-44
At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) riboso... 172 9e-44
At5g35753.1 68418.m04282 expressed protein 28 2.7
At2g24180.1 68415.m02889 cytochrome P450 family protein 28 2.7
At2g45830.2 68415.m05700 expressed protein 27 4.8
At2g45830.1 68415.m05699 expressed protein 27 4.8
At5g54650.2 68418.m06805 formin homology 2 domain-containing pro... 27 6.3
At5g54650.1 68418.m06804 formin homology 2 domain-containing pro... 27 6.3
At4g36540.2 68417.m05189 basic helix-loop-helix (bHLH) family pr... 27 8.4
At4g36540.1 68417.m05188 basic helix-loop-helix (bHLH) family pr... 27 8.4
At3g28890.1 68416.m03606 leucine-rich repeat family protein cont... 27 8.4
At1g77300.1 68414.m09002 SET domain-containing protein similar t... 27 8.4
>At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S
ribosomal protein L5 GB:P49625 from [Oryza sativa]
Length = 301
Score = 173 bits (421), Expect = 5e-44
Identities = 78/136 (57%), Positives = 96/136 (70%)
Frame = +3
Query: 60 MGFVKVVKNKQYFKRYQVKFQRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 239
M FVK K+ YFKRYQVKF+RRR+GKTDY AR RL+ QDKNKYNTPKYR +VR +NKD+
Sbjct: 1 MVFVKSTKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60
Query: 240 TCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYT 419
Q+ + I GD + +AY+HELP+YG+ VGLTNYAAAYCTG D Y
Sbjct: 61 VAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYE 120
Query: 420 GATEVTGDEYNVEPVD 467
G E TG++++VEP D
Sbjct: 121 GNVEATGEDFSVEPTD 136
>At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) ribosomal
protein L5, rice
Length = 301
Score = 172 bits (419), Expect = 9e-44
Identities = 78/136 (57%), Positives = 96/136 (70%)
Frame = +3
Query: 60 MGFVKVVKNKQYFKRYQVKFQRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 239
M FVK K+ YFKRYQVKF+RRR+GKTDY AR RL+ QDKNKYNTPKYR +VR +NKD+
Sbjct: 1 MVFVKSSKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60
Query: 240 TCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYT 419
Q+ + I GD + +AY+HELP+YG+ VGLTNYAAAYCTG D Y
Sbjct: 61 VAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYE 120
Query: 420 GATEVTGDEYNVEPVD 467
G E TG++++VEP D
Sbjct: 121 GNVEATGEDFSVEPTD 136
>At5g35753.1 68418.m04282 expressed protein
Length = 592
Score = 28.3 bits (60), Expect = 2.7
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 120 QRRREGKTDYYARKRL-VVQDKNKYNTPKYRLIVRLSNKDVTCQ 248
Q RR G+ DYY +KRL Y +Y + + NK ++C+
Sbjct: 77 QSRRSGEIDYYLQKRLDTFWTVCTYCKVQYEYLRKYVNKRLSCK 120
>At2g24180.1 68415.m02889 cytochrome P450 family protein
Length = 503
Score = 28.3 bits (60), Expect = 2.7
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 374 QQQTSAVGSSIVSQTHLDTIAWEFMRVGSTDNVITLN 264
Q Q + +GSS ++ TH+ I + G +VITL+
Sbjct: 281 QSQETKLGSSRITDTHIRAIIMDLFVAGVDTSVITLD 317
>At2g45830.2 68415.m05700 expressed protein
Length = 382
Score = 27.5 bits (58), Expect = 4.8
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -3
Query: 201 LECCICFYPGQRGVCEHSSQFFPHDASEI 115
+E + +P + CE S F PHD EI
Sbjct: 326 MEESMVMFPSEESPCEMPSPFNPHDLKEI 354
>At2g45830.1 68415.m05699 expressed protein
Length = 523
Score = 27.5 bits (58), Expect = 4.8
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -3
Query: 201 LECCICFYPGQRGVCEHSSQFFPHDASEI 115
+E + +P + CE S F PHD EI
Sbjct: 467 MEESMVMFPSEESPCEMPSPFNPHDLKEI 495
>At5g54650.2 68418.m06805 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 900
Score = 27.1 bits (57), Expect = 6.3
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = -1
Query: 464 NWFNIIFITSDFSGTCVETVQAEPLQQSSCQQQTSAVGSSIVSQTHLDTIAW 309
NW ++F FSG V T++ P + Q A + V++ H++ +W
Sbjct: 13 NWSRLVFWLILFSGLLVITLEENPEKDEIFLSQFMAPSTGQVNE-HMEETSW 63
>At5g54650.1 68418.m06804 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 900
Score = 27.1 bits (57), Expect = 6.3
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = -1
Query: 464 NWFNIIFITSDFSGTCVETVQAEPLQQSSCQQQTSAVGSSIVSQTHLDTIAW 309
NW ++F FSG V T++ P + Q A + V++ H++ +W
Sbjct: 13 NWSRLVFWLILFSGLLVITLEENPEKDEIFLSQFMAPSTGQVNE-HMEETSW 63
>At4g36540.2 68417.m05189 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 302
Score = 26.6 bits (56), Expect = 8.4
Identities = 13/58 (22%), Positives = 32/58 (55%)
Frame = +3
Query: 78 VKNKQYFKRYQVKFQRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQV 251
VKN + + ++ +R+ EGKT+ +K++ +D+ + P + +SN + + ++
Sbjct: 79 VKNNGHSRAITLQNKRKPEGKTEKREKKKIKAEDETE---PSMKGKSNMSNTETSSEI 133
>At4g36540.1 68417.m05188 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 304
Score = 26.6 bits (56), Expect = 8.4
Identities = 13/58 (22%), Positives = 32/58 (55%)
Frame = +3
Query: 78 VKNKQYFKRYQVKFQRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQV 251
VKN + + ++ +R+ EGKT+ +K++ +D+ + P + +SN + + ++
Sbjct: 79 VKNNGHSRAITLQNKRKPEGKTEKREKKKIKAEDETE---PSMKGKSNMSNTETSSEI 133
>At3g28890.1 68416.m03606 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to Hcr2-0B
[Lycopersicon esculentum] gi|3894387|gb|AAC78593
Length = 711
Score = 26.6 bits (56), Expect = 8.4
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Frame = -1
Query: 377 CQQQTSAVGSSIVSQTHLDTIAWEFMR--------VGSTDNVITLNA*VCNLTGNI 234
C Q + V SSI + +HL T+ F R +G ++ TLN V N G I
Sbjct: 178 CNQFSGQVPSSIGNLSHLTTLELSFNRFFGQFPSSIGGLSHLTTLNLFVNNFLGQI 233
>At1g77300.1 68414.m09002 SET domain-containing protein similar to
huntingtin interacting protein 1 [Homo sapiens]
GI:12697196; contains Pfam profile PF00856: SET domain
Length = 1759
Score = 26.6 bits (56), Expect = 8.4
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 84 NKQYFKRYQVKFQRRREGKTDYYAR 158
N+Q+ KR VKF+R + GK Y R
Sbjct: 1017 NQQFQKRKYVKFERFQSGKKGYGLR 1041
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,224,888
Number of Sequences: 28952
Number of extensions: 197765
Number of successful extensions: 527
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 791932800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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