Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_N24
(441 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce... 122 3e-29
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 26 3.0
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 26 3.0
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo... 25 5.2
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 25 6.8
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 25 6.8
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 25 6.8
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po... 25 6.8
SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 6.8
SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor c... 24 9.0
SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyc... 24 9.0
>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 122 bits (293), Expect = 3e-29
Identities = 56/89 (62%), Positives = 69/89 (77%)
Frame = +1
Query: 175 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 354
LF R ++F IGQDIQP RDLSRFV+WP+YIR+QR++ +L RLKVPP I QF +TLDK
Sbjct: 26 LFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLDKN 85
Query: 355 TAKGLFKILEKYRPETEAVRKERLKKAAE 441
TA +FK+L KYRPET A +K+RL AE
Sbjct: 86 TATQVFKLLNKYRPETAAEKKQRLVAEAE 114
>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
Par2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 627
Score = 25.8 bits (54), Expect = 3.0
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 283 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 384
KAVL LK P IN F + L + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 25.8 bits (54), Expect = 3.0
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 296 SVVSKCRRQSTSSPRH*IKPQPKVCSRSWRNTG 394
S V R Q+TSSP + ++PQ KV + + G
Sbjct: 182 SSVLSGRMQNTSSPTNSLRPQLKVQTNGYETPG 214
>SPAC1851.03 |ckb1||CK2 family regulatory subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 25.0 bits (52), Expect = 5.2
Identities = 9/13 (69%), Positives = 13/13 (100%)
Frame = +1
Query: 355 TAKGLFKILEKYR 393
TA+GL+K+LEKY+
Sbjct: 94 TAQGLYKMLEKYK 106
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 24.6 bits (51), Expect = 6.8
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 301 RLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETEAVRKERL 426
RL + P+ F KTTAK L + + RP+ E +R L
Sbjct: 455 RLSLNRPVRVFVDN-KKTTAKLLTQEFVRVRPQRELLRPAML 495
>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 24.6 bits (51), Expect = 6.8
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 159 EDCKPSIREENKELCY 206
E CK + + NKELCY
Sbjct: 947 EACKACLLQGNKELCY 962
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 24.6 bits (51), Expect = 6.8
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = +3
Query: 60 ELKSIQDGXXXXXXXDREKSSGRSTCGEES*A-QEDCKPSIREENKELC 203
ELKS+ +G D S S C +E + KPS + K+ C
Sbjct: 215 ELKSVNEGSSCCSKKDSSPSEKPSCCSQEKKSCCSSKKPSCCSQEKKGC 263
>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 330
Score = 24.6 bits (51), Expect = 6.8
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -2
Query: 293 NTAF*RWMRIYFGHRTKRDRSLVGWMSWPIAKF 195
N F R +R+YF + DRSL + W ++
Sbjct: 171 NANFLRQLRVYFECNYQLDRSLRPYRQWLFRRY 203
>SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 215
Score = 24.6 bits (51), Expect = 6.8
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 326 TSSPRH*IKPQPKVCSRSWRNTGQKLRQSGKSV 424
+ + RH + P+ ++C S RN G +S K V
Sbjct: 106 SKAQRHVLDPRCQICVHSQRNDGDDNLESDKFV 138
>SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor
complex subunit Rrn5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 556
Score = 24.2 bits (50), Expect = 9.0
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 422 RSFLTASVSGLYFSKILNRPLAVVLSNVWVNW 327
R+ + ASV K + P+A+ +S W++W
Sbjct: 124 RNHVDASVRSQCLLKYEDIPIAMEMSQNWIDW 155
>SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 410
Score = 24.2 bits (50), Expect = 9.0
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +2
Query: 281 KRLCYSVVSKCRRQSTSSPRH*IKPQPKVCSRSWRNTGQKL 403
K+L ++ K R Q T SP P + SW + GQ+L
Sbjct: 140 KQLVRDILEKAR-QHTISPLDEQDSGPSSLASSWASVGQRL 179
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,733,781
Number of Sequences: 5004
Number of extensions: 32838
Number of successful extensions: 99
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -