Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_N24
(441 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 121 2e-28
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 121 2e-28
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 94 4e-20
11_03_0212 - 11761856-11762037,11762302-11762398,11763571-117645... 29 1.3
08_01_1066 - 10887509-10888171,10888782-10888964,10889234-10889497 28 3.8
06_03_1228 - 28563546-28563630,28563897-28564000,28564256-285647... 27 5.1
03_05_0223 - 22087076-22087340,22087448-22087726,22087808-220879... 27 5.1
01_06_0776 + 31912953-31914086,31914195-31915073,31915160-31915198 27 6.7
04_03_0543 + 16955440-16955518,16956623-16956726,16957456-169576... 27 8.8
03_02_0112 + 5689439-5689474,5689629-5689778,5690194-5690361,569... 27 8.8
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 121 bits (292), Expect = 2e-28
Identities = 55/89 (61%), Positives = 69/89 (77%)
Frame = +1
Query: 175 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 354
LFEKR K F IG + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLDK
Sbjct: 24 LFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKN 83
Query: 355 TAKGLFKILEKYRPETEAVRKERLKKAAE 441
A LFK+L KYRPE +A +KERL K A+
Sbjct: 84 LATNLFKMLLKYRPEDKAAKKERLLKRAQ 112
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 121 bits (292), Expect = 2e-28
Identities = 55/89 (61%), Positives = 69/89 (77%)
Frame = +1
Query: 175 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 354
LFEKR K F IG + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLDK
Sbjct: 8 LFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKN 67
Query: 355 TAKGLFKILEKYRPETEAVRKERLKKAAE 441
A LFK+L KYRPE +A +KERL K A+
Sbjct: 68 LATNLFKMLLKYRPEDKAAKKERLLKRAQ 96
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 94.3 bits (224), Expect = 4e-20
Identities = 45/85 (52%), Positives = 58/85 (68%)
Frame = +1
Query: 175 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 354
LFEKR K F IG + P +DL RFVRWPK +RIQRQ+ VL++RLKVPP +NQFT+TLDK
Sbjct: 25 LFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQRRVLKQRLKVPPALNQFTRTLDKN 84
Query: 355 TAKGLFKILEKYRPETEAVRKERLK 429
++L++ + E E E K
Sbjct: 85 LGCQKERLLKRAQAEAEGKTVEAKK 109
>11_03_0212 -
11761856-11762037,11762302-11762398,11763571-11764545,
11766172-11766263,11766450-11766510
Length = 468
Score = 29.5 bits (63), Expect = 1.3
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Frame = +1
Query: 196 NFAIGQDIQPTRDLSRFVRWPKYIRI-QRQKAVLQRRLKVPPP--INQFTQTLDK-TTAK 363
N +GQD + ++ +V+ Y I Q+ + +L RLK PP + TQ + K K
Sbjct: 352 NSCMGQDEEVVNSINSYVKQKWYAEILQKDRKILTERLKKKPPAWTAKHTQAVKKIKNCK 411
Query: 364 GLFKILEK 387
+L+K
Sbjct: 412 AAKDVLQK 419
>08_01_1066 - 10887509-10888171,10888782-10888964,10889234-10889497
Length = 369
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +2
Query: 296 SVVSKCRRQSTSSPRH*IKPQPKVCSRSWRNTGQKLRQSGKS 421
+++ +R S++ K QP C+RSW G+ +Q G++
Sbjct: 74 TMIEDLKRSSSADTMEQTK-QPLSCARSWSTCGKSSKQRGRN 114
>06_03_1228 -
28563546-28563630,28563897-28564000,28564256-28564759,
28564854-28564932,28566053-28566130,28566227-28566268,
28566352-28566449,28566542-28566673,28566757-28566879
Length = 414
Score = 27.5 bits (58), Expect = 5.1
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +3
Query: 219 PANQRSIPFRAMAEIYSHPASKGCVTASSQSAAANQ 326
P NQ P +Y+H AS G V ANQ
Sbjct: 317 PVNQGQFPPAVQTNLYNHAASSGGVREQVHLTQANQ 352
>03_05_0223 -
22087076-22087340,22087448-22087726,22087808-22087950,
22088029-22088133,22088272-22088465,22088561-22088753,
22088893-22089202,22089335-22089558,22089862-22089990,
22090019-22090078,22090426-22090617,22091463-22091522,
22091606-22091688,22092473-22092611,22092949-22093083,
22093187-22093462
Length = 928
Score = 27.5 bits (58), Expect = 5.1
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +1
Query: 271 IQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETEAVRKERLKK 432
+ + LQ R + P PI Q ++ KGL Y P+ E + +++KK
Sbjct: 814 VHASRQPLQMRKQKPEPIRQLNPKFEENYIKGL-----DYDPDRERAQMKKMKK 862
>01_06_0776 + 31912953-31914086,31914195-31915073,31915160-31915198
Length = 683
Score = 27.1 bits (57), Expect = 6.7
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = +3
Query: 159 EDCKPSIREENKELCYWPGHPANQRSIPFRAMAEIYSHPASKGCVTASSQSA 314
ED + + E+ +L +W A S PF A P + V +SS A
Sbjct: 398 EDGRSKLTSESNQLTFWSDSQAGNGSSPFHHSAGGGMSPYYRDVVLSSSSKA 449
>04_03_0543 +
16955440-16955518,16956623-16956726,16957456-16957655,
16958554-16958654,16959408-16959603,16960243-16960324,
16960402-16960668,16960790-16960917,16961285-16961465
Length = 445
Score = 26.6 bits (56), Expect = 8.8
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +1
Query: 259 KYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKIL-EKYRPETEAVRKERL 426
K +R+Q + L ++ P I + L + KGLF +L E+Y + KE++
Sbjct: 31 KILRVQPEVRKLYLLVRAPDAIAAEERVLTEVVGKGLFDVLREQYGAGFNSFIKEKI 87
>03_02_0112 +
5689439-5689474,5689629-5689778,5690194-5690361,
5691334-5691458,5691914-5692007,5692844-5692942,
5693730-5693910,5694051-5694166,5694758-5694913,
5695226-5695354,5695554-5695718
Length = 472
Score = 26.6 bits (56), Expect = 8.8
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -1
Query: 285 LLTLDANIFRPSHETG*ISGWL 220
LLT + N RPSH + GW+
Sbjct: 102 LLTKNPNFVRPSHRLNEVQGWV 123
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,658,533
Number of Sequences: 37544
Number of extensions: 228279
Number of successful extensions: 667
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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