Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_N24
(441 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.) 128 2e-30
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24) 36 0.011
SB_49583| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.56
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.56
SB_48178| Best HMM Match : RVT_1 (HMM E-Value=0.013) 29 1.7
SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.9
SB_4001| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0056) 27 5.2
SB_54431| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_54822| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_52288| Best HMM Match : Coprinus_mating (HMM E-Value=0.86) 27 9.1
SB_1597| Best HMM Match : PHD (HMM E-Value=1.4e-05) 27 9.1
>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 128 bits (310), Expect = 2e-30
Identities = 58/89 (65%), Positives = 71/89 (79%)
Frame = +1
Query: 175 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 354
L EKR +NF IG DIQP RDLSRFVRWP+Y+++QRQK++L +RLKVPP INQFTQ LD+
Sbjct: 31 LIEKRPRNFGIGGDIQPKRDLSRFVRWPRYVKLQRQKSLLYQRLKVPPAINQFTQALDRQ 90
Query: 355 TAKGLFKILEKYRPETEAVRKERLKKAAE 441
+ LFK+L KYRPET+A +K RL AE
Sbjct: 91 STVQLFKLLHKYRPETKAEKKARLSAKAE 119
>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
Length = 172
Score = 36.3 bits (80), Expect = 0.011
Identities = 16/25 (64%), Positives = 19/25 (76%)
Frame = +1
Query: 367 LFKILEKYRPETEAVRKERLKKAAE 441
LFK+L KYRPET+A +K RL AE
Sbjct: 4 LFKLLHKYRPETKAEKKARLSAKAE 28
>SB_49583| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 163
Score = 30.7 bits (66), Expect = 0.56
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +3
Query: 111 EKSSGRSTCGEES*AQEDCKPSIREENKELCY 206
EK G TCG+ES DC P +E E CY
Sbjct: 94 EKKEGCYTCGDESHIARDC-PEKKESPGESCY 124
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 30.7 bits (66), Expect = 0.56
Identities = 24/77 (31%), Positives = 34/77 (44%)
Frame = +3
Query: 105 DREKSSGRSTCGEES*AQEDCKPSIREENKELCYWPGHPANQRSIPFRAMAEIYSHPASK 284
DR+KS+GR++ A + K S R E++ + P R A E SH S
Sbjct: 978 DRQKSNGRNSRSVSPSAVKRTKGSKRSESRSVSRSPERDRKGRD---SAKKERQSHSESP 1034
Query: 285 GCVTASSQSAAANQPVH 335
VT SS+ +P H
Sbjct: 1035 QRVTKSSKERPRKRPRH 1051
>SB_48178| Best HMM Match : RVT_1 (HMM E-Value=0.013)
Length = 1105
Score = 29.1 bits (62), Expect = 1.7
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 331 FTQTLDKTTAKGLFKILEKYRPETEAVRKERLKK 432
FT+ L K K L + ++ RP EA KE++KK
Sbjct: 340 FTEPLSKERWKDLSERIQPLRPNMEAGMKEKIKK 373
>SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 832
Score = 27.9 bits (59), Expect = 3.9
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +1
Query: 238 SRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEK 387
SR RW Y R+ KA+LQR ++ I Q T + K +L K
Sbjct: 508 SRTFRWDPYSRMSTLKALLQRMEQLKTQIVQETCEIKKLEKLSRLVLLRK 557
>SB_4001| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0056)
Length = 508
Score = 27.5 bits (58), Expect = 5.2
Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = +3
Query: 237 IPFRAMAEIYSHPA-SKGCVTASSQSAAANQPVHPDIR*NHSQRSVQDLGEIQA 395
+P + HP S GC T SS S A PV PD + Q L E+ A
Sbjct: 65 LPVVTTVDSTGHPQLSSGCSTNSSSSQTAPFPVIPDTIIANMQSLFAKLDELYA 118
>SB_54431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1023
Score = 27.1 bits (57), Expect = 6.9
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +3
Query: 279 SKGCVTASSQSAAANQPVHPDIR*NHSQRSVQDLGEIQA 395
S GC T SS S A PV PD + Q + L E+ A
Sbjct: 286 SSGCSTNSSSSQTARFPVIPDTIIANMQSLLPKLDELYA 324
>SB_54822| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1652
Score = 26.6 bits (56), Expect = 9.1
Identities = 21/74 (28%), Positives = 33/74 (44%)
Frame = +2
Query: 146 KLSPRRL*TLYSRREQRTLLLARTSSQPEIYPVSCDGRNIFASSVKRLCYSVVSKCRRQS 325
K SPR+ T S + + A S + P NI A+S+K S+ +
Sbjct: 954 KHSPRQNITATSLKSSAPKIAATFSRLSTVKP--SPKPNIAATSLKSSAVKPPSRLNNAA 1011
Query: 326 TSSPRH*IKPQPKV 367
TSS + +KP P++
Sbjct: 1012 TSSKSNTVKPTPRL 1025
>SB_52288| Best HMM Match : Coprinus_mating (HMM E-Value=0.86)
Length = 769
Score = 26.6 bits (56), Expect = 9.1
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 226 TRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPP 321
TRDL F+ +YI I++ + RRL +P P
Sbjct: 29 TRDL-HFMNTEEYIMIRKAAKAIVRRLSLPSP 59
>SB_1597| Best HMM Match : PHD (HMM E-Value=1.4e-05)
Length = 763
Score = 26.6 bits (56), Expect = 9.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 331 FTQTLDKTTAKGLFKILEKYRPETEAVRKERLKK 432
FT+ L K K L + ++ RP EA K++ KK
Sbjct: 203 FTEPLSKERWKDLSERIQPLRPNMEAGMKQKTKK 236
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,002,630
Number of Sequences: 59808
Number of extensions: 247712
Number of successful extensions: 610
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 859323430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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