Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_N24
         (441 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   0.65 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   0.65 
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    23   1.5  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    23   1.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   4.5  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   7.9  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.2 bits (50), Expect = 0.65
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 192 KELCYWPGHPANQR-SIPFRAMAEIYSHPASKGCVTASSQSAAA 320
           ++ CY+P HP+ Q  S         +S  ASK  ++ SS +  A
Sbjct: 385 EKTCYYPYHPSTQEDSEEHLTPKRFHSRAASKEDLSPSSLADGA 428


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.2 bits (50), Expect = 0.65
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 192 KELCYWPGHPANQR-SIPFRAMAEIYSHPASKGCVTASSQSAAA 320
           ++ CY+P HP+ Q  S         +S  ASK  ++ SS +  A
Sbjct: 385 EKTCYYPYHPSTQEDSEEHLTPKRFHSRAASKEDLSPSSLADGA 428


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +3

Query: 162 DCKPSIREENKELCYWPGHPANQ-RSIPFRAM 254
           DC   I +E   L YW G+ AN  R  P +A+
Sbjct: 58  DCFVRIPKEQGFLSYWRGNLANVIRYFPTQAL 89


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +3

Query: 162 DCKPSIREENKELCYWPGHPANQ-RSIPFRAM 254
           DC   I +E   L YW G+ AN  R  P +A+
Sbjct: 58  DCFVRIPKEQGFLSYWRGNLANVIRYFPTQAL 89


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 264  YSHPASKGCVTASSQSAAANQPV 332
            Y H  S+G V   S  +A N PV
Sbjct: 1831 YDHYGSRGSVGRRSVGSARNIPV 1853



 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 283 KAVLQRRLKVPPPINQFTQT 342
           +  L+ ++ VPP I QF+ T
Sbjct: 572 RGTLEVQVMVPPTIQQFSFT 591


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 5/8 (62%), Positives = 8/8 (100%)
 Frame = -3

Query: 238 IDLWLAGC 215
           +D+W+AGC
Sbjct: 262 LDVWMAGC 269


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,766
Number of Sequences: 438
Number of extensions: 2184
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11450997
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)