Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_N24
         (441 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)           122   1e-28
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ...   120   4e-28
At5g64290.1 68418.m08076 oxoglutarate/malate translocator, putat...    29   1.1  
At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical ...    26   9.8  
At1g27340.1 68414.m03330 F-box family protein contains Pfam PF00...    26   9.8  

>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
          Length = 257

 Score =  122 bits (293), Expect = 1e-28
 Identities = 54/89 (60%), Positives = 70/89 (78%)
 Frame = +1

Query: 175 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 354
           LFE+R K F IG  + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLDK 
Sbjct: 23  LFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKN 82

Query: 355 TAKGLFKILEKYRPETEAVRKERLKKAAE 441
            A  LFK+L KYRPE +A +KERL K A+
Sbjct: 83  LATSLFKVLLKYRPEDKAAKKERLVKKAQ 111


>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
           RIBOSOMAL PROTEIN L7A - Oryza sativa,
           SWISSPROT:RL7A_ORYSA
          Length = 256

 Score =  120 bits (289), Expect = 4e-28
 Identities = 54/89 (60%), Positives = 69/89 (77%)
 Frame = +1

Query: 175 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 354
           LFE+R K F IG  + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLDK 
Sbjct: 22  LFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKN 81

Query: 355 TAKGLFKILEKYRPETEAVRKERLKKAAE 441
            A  LFKIL KYRPE +A +KERL   A+
Sbjct: 82  LATSLFKILLKYRPEDKAAKKERLLNKAQ 110


>At5g64290.1 68418.m08076 oxoglutarate/malate translocator, putative
           similar to SWISS-PROT:Q41364 2-oxoglutarate/malate
           translocator, chloroplast precursor. [Spinach]{Spinacia
           oleracea}
          Length = 563

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -2

Query: 416 FLTASVSGLYFSKILNRPLAVVLSNVWVNW 327
           FLTA+   L   K+    L VV+SN WV+W
Sbjct: 280 FLTAAAQNLLCLKLAEE-LGVVISNPWVSW 308


>At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical to
           XRN2 [Arabidopsis thaliana] GI:11875630; contains Pfam
           domain PF03159: Putative 5'-3' exonuclease domain
          Length = 1012

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -3

Query: 244 NGIDLWLAGCPGQ*QSSLFSSRIEGLQ 164
           +G++ ++A C G  Q S F S +EG++
Sbjct: 739 DGMNGYIASCGGDSQPSCFCSTVEGME 765


>At1g27340.1 68414.m03330 F-box family protein contains Pfam
           PF00646: F-box domain; similar to fim protein; similar
           to ESTs gb|T42445, gb|T76780, gb|AA650733, and
           emb|Z17748
          Length = 467

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 364 GLFKILEKYRPETEAVRKER 423
           G+FK+LE  +P  +  RKER
Sbjct: 77  GIFKMLETVKPPVKRTRKER 96


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,299,349
Number of Sequences: 28952
Number of extensions: 180801
Number of successful extensions: 505
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 702840360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)