Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_N23
         (545 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical pr...   285   2e-77
Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical pr...    31   0.72 
Z81055-1|CAB02889.1|  618|Caenorhabditis elegans Hypothetical pr...    28   3.8  
AL021474-2|CAA16309.3|  655|Caenorhabditis elegans Hypothetical ...    28   3.8  
AF099919-10|AAC68792.1|  205|Caenorhabditis elegans Max-like pro...    28   3.8  
Z66515-10|CAI70410.1|  510|Caenorhabditis elegans Hypothetical p...    28   5.0  
Z66515-9|CAA91346.1|  519|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z81466-2|CAC42256.1|  954|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z81466-1|CAB03869.1|  982|Caenorhabditis elegans Hypothetical pr...    27   6.7  
M77697-7|AAA27902.6|  903|Caenorhabditis elegans Hypothetical pr...    27   6.7  
AJ133374-1|CAB40208.1|  954|Caenorhabditis elegans lin-10 protei...    27   6.7  
Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical p...    27   8.8  
Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical pr...    27   8.8  
X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein.     27   8.8  

>Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical
           protein F10B5.1 protein.
          Length = 214

 Score =  285 bits (698), Expect = 2e-77
 Identities = 131/172 (76%), Positives = 142/172 (82%)
 Frame = +2

Query: 29  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 208
           MGRRPARCYRY KNKPYPKSRFCRGVPD KIRIFDLG KRA VD FP CVH++S+E E L
Sbjct: 1   MGRRPARCYRYIKNKPYPKSRFCRGVPDAKIRIFDLGNKRANVDTFPACVHMMSNEREHL 60

Query: 209 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 388
           SSEALEA RIC NKY+VKNCGKD FH+R+R HPFHV RINKMLSCAGADRLQTGMRGA+G
Sbjct: 61  SSEALEAARICANKYMVKNCGKDGFHLRVRKHPFHVTRINKMLSCAGADRLQTGMRGAYG 120

Query: 389 KPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWG 544
           KPQG VARV IG  + S+R  +      IEA RRAKFKFPGRQ I  S+KWG
Sbjct: 121 KPQGLVARVDIGDILFSMRIKEGNVKHAIEAFRRAKFKFPGRQIIVSSRKWG 172


>Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical
           protein C09G5.2 protein.
          Length = 476

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -3

Query: 393 GFPNAPRIPVWSLSAPA 343
           GFPN+P +P+W LS P+
Sbjct: 232 GFPNSPLLPIWLLSYPS 248


>Z81055-1|CAB02889.1|  618|Caenorhabditis elegans Hypothetical
           protein F01G10.1 protein.
          Length = 618

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +2

Query: 374 RGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIE--ALRRAKFKFPGRQK 520
           R   GKP   +A+   G+ I  + + D W  + +    +   K +F G QK
Sbjct: 228 RSTKGKPTAIIAKTLKGKGIEGIENEDNWHGKPVPEGTVNAIKARFHGSQK 278


>AL021474-2|CAA16309.3|  655|Caenorhabditis elegans Hypothetical
           protein Y32F6A.3 protein.
          Length = 655

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 5/37 (13%)
 Frame = +3

Query: 216 RRWKQAVSVATSTS-----*RTAVKISSTSG*DYTPS 311
           RRWK+ V +AT+TS      R+ V+ +STS    TP+
Sbjct: 504 RRWKKVVPIATNTSVSSSTPRSVVRTTSTSSVPTTPT 540


>AF099919-10|AAC68792.1|  205|Caenorhabditis elegans Max-like
           protein 2 protein.
          Length = 205

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +2

Query: 89  RFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGR 235
           R C  +   K  I D  K+ A ++     + +++ EYEQ++S   +AG+
Sbjct: 93  RACDFMSQLKTDISDADKQLAQLNAQAAALEMIASEYEQMASSVPDAGQ 141


>Z66515-10|CAI70410.1|  510|Caenorhabditis elegans Hypothetical
           protein R53.1b protein.
          Length = 510

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -2

Query: 406 YCALGFPERTT-HPSLEPISSSARQHFIDA 320
           Y +LG  + T  HP+L  +SS  R+H++ A
Sbjct: 465 YTSLGGRDNTVKHPALRIVSSDGREHYLPA 494


>Z66515-9|CAA91346.1|  519|Caenorhabditis elegans Hypothetical
           protein R53.1a protein.
          Length = 519

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -2

Query: 406 YCALGFPERTT-HPSLEPISSSARQHFIDA 320
           Y +LG  + T  HP+L  +SS  R+H++ A
Sbjct: 474 YTSLGGRDNTVKHPALRIVSSDGREHYLPA 503


>Z81466-2|CAC42256.1|  954|Caenorhabditis elegans Hypothetical
           protein C09H6.2b protein.
          Length = 954

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -1

Query: 107 AHPDKTEI*DTVYSYNIDNISLVGAPLCSPQS 12
           AH +K  I D +   NI+ ISLVG PL + Q+
Sbjct: 812 AHSNKLNIGDQII--NINGISLVGLPLSAAQT 841


>Z81466-1|CAB03869.1|  982|Caenorhabditis elegans Hypothetical
           protein C09H6.2a protein.
          Length = 982

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -1

Query: 107 AHPDKTEI*DTVYSYNIDNISLVGAPLCSPQS 12
           AH +K  I D +   NI+ ISLVG PL + Q+
Sbjct: 840 AHSNKLNIGDQII--NINGISLVGLPLSAAQT 869


>M77697-7|AAA27902.6|  903|Caenorhabditis elegans Hypothetical
           protein B0303.11 protein.
          Length = 903

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 19/65 (29%), Positives = 32/65 (49%)
 Frame = -2

Query: 535 LRYIDLLATRELELSTTQSLNDLCLPTVT*AYRHNGLSNTHTRYCALGFPERTTHPSLEP 356
           +R + LL+T ++ +S   S + LC+PT         L N +     L  PE  + P+L  
Sbjct: 344 IRCLLLLSTVQILVSAIGSYDILCIPTTVFYLFAYALFNFYVFLVKLSDPEIPSPPTLLS 403

Query: 355 ISSSA 341
           ++ SA
Sbjct: 404 LAISA 408


>AJ133374-1|CAB40208.1|  954|Caenorhabditis elegans lin-10 protein
           protein.
          Length = 954

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -1

Query: 107 AHPDKTEI*DTVYSYNIDNISLVGAPLCSPQS 12
           AH +K  I D +   NI+ ISLVG PL + Q+
Sbjct: 812 AHSNKLNIGDQII--NINGISLVGLPLSAAQT 841


>Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical
           protein R06C7.10 protein.
          Length = 1938

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -2

Query: 409 RYCALGFPERTTHPS-LEPISSSARQHFIDADDME 308
           R C  GFP RT HP  ++  +  A +    +DDM+
Sbjct: 708 RICRKGFPNRTQHPDFVQRYAILAAKEAKSSDDMK 742


>Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical
           protein R06C7.10 protein.
          Length = 1938

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -2

Query: 409 RYCALGFPERTTHPS-LEPISSSARQHFIDADDME 308
           R C  GFP RT HP  ++  +  A +    +DDM+
Sbjct: 708 RICRKGFPNRTQHPDFVQRYAILAAKEAKSSDDMK 742


>X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein.
          Length = 1938

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -2

Query: 409 RYCALGFPERTTHPS-LEPISSSARQHFIDADDME 308
           R C  GFP RT HP  ++  +  A +    +DDM+
Sbjct: 708 RICRKGFPNRTQHPDFVQRYAILAAKEAKSSDDMK 742


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,609,548
Number of Sequences: 27780
Number of extensions: 303369
Number of successful extensions: 812
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)