Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_N22
         (489 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)               218   2e-57
SB_21518| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     27   6.3  
SB_56996| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  
SB_49189| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  

>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
          Length = 328

 Score =  218 bits (532), Expect = 2e-57
 Identities = 101/144 (70%), Positives = 116/144 (80%)
 Frame = +1

Query: 58  MSGGLDLLALSEEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXX 237
           MSGGLD+L L EEDV K LAA  HLGA N +FQME YVYKR+ DG ++IN+++TWEK   
Sbjct: 1   MSGGLDILQLKEEDVVKFLAAGVHLGANNCDFQMEDYVYKRKSDGVNIINVKKTWEKLLL 60

Query: 238 XXXXXXXXEDPADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPR 417
                   E+PADV VIS+R +GQRA+LK+A+HTGATPIAGRFTPG FTNQIQAAFREPR
Sbjct: 61  AARIIVTIENPADVCVISARPYGQRAILKYASHTGATPIAGRFTPGTFTNQIQAAFREPR 120

Query: 418 LLIV*DPAQDHQPITEASYVNIPV 489
           LLIV DP  DHQP+TEASYVNIPV
Sbjct: 121 LLIVCDPRIDHQPVTEASYVNIPV 144


>SB_21518| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 376

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
 Frame = -1

Query: 372 RSETSSN-WCCASVGSKFKHSTLAKCT**DNKHISWILHGDNSTSSEYKLFPCTPKINYV 196
           RS  SS  + C + G  F H            ++S I H    T S  +LF C     + 
Sbjct: 229 RSHASSRPYSCPTCGKTFSH------------YVSLIQH--KKTHSSVRLFECKKCGKHF 274

Query: 195 RTVTTAFINVRLHLEINIFRSQMGGRRKH 109
           +  +T   ++ +H +I  F  +  G+R H
Sbjct: 275 KRSSTLSTHMLIHADIRPFSCEFCGKRFH 303


>SB_56996| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 259

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 399 GLDLVSKCTRSETSSNWCCASVGSKFKHSTLAKCT 295
           G+  VS   RS++ +N C A+      HS+L K T
Sbjct: 10  GIYEVSNVNRSDSGNNSCVAASSIGLTHSSLVKVT 44


>SB_49189| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1373

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 276 ISWILHGDNSTSSEYKLFPCTPKINY 199
           + W L  +N+  +EY L P T K+ Y
Sbjct: 569 LEWFLKNENALPAEYVLQPVTAKLPY 594


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,094,434
Number of Sequences: 59808
Number of extensions: 294450
Number of successful extensions: 518
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)