Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_N22
(489 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi... 163 6e-41
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi... 159 7e-40
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi... 159 7e-40
At1g80540.1 68414.m09441 expressed protein ; expression supporte... 32 0.24
At4g03940.1 68417.m00557 expressed protein 27 6.8
At2g07020.1 68415.m00803 protein kinase family protein contains ... 27 9.0
At1g07150.1 68414.m00761 protein kinase family protein contains ... 27 9.0
>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
to laminin receptor-like protein GB:U01955 [Arabidopsis
thaliana]; identical to cDNA laminin receptor homologue
GI:16379
Length = 298
Score = 163 bits (396), Expect = 6e-41
Identities = 76/137 (55%), Positives = 93/137 (67%)
Frame = +1
Query: 79 LALSEEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXXXXXXX 258
L+ E DV M AA HLG +N N+QME YV+KRR DG ++ NL +TWEK
Sbjct: 12 LSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIVA 71
Query: 259 XEDPADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIV*DP 438
E+P D+ V S+R +GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 72 IENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTDP 131
Query: 439 AQDHQPITEASYVNIPV 489
DHQPI E + NIP+
Sbjct: 132 RTDHQPIKEGALGNIPI 148
>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
to p40 protein homolog GB:AAB67866 [Arabidopsis
thaliana]; similar to 40S ribosomal protein SA (P40)
GB:O65751 [Cicer arietinum]
Length = 280
Score = 159 bits (387), Expect = 7e-40
Identities = 73/132 (55%), Positives = 91/132 (68%)
Frame = +1
Query: 91 EEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXXXXXXXXEDP 270
E D+ ML+A HLG +N N+QME YV+KRR DG ++INL +TW+K E+P
Sbjct: 17 EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76
Query: 271 ADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIV*DPAQDH 450
D+ V S+R +GQRAVLKFA +TG IAGR TPG FTNQ+Q +F EPRLLI+ DP DH
Sbjct: 77 KDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDH 136
Query: 451 QPITEASYVNIP 486
QPI E + NIP
Sbjct: 137 QPIKEGALGNIP 148
>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
to p40 protein homolog GB:AAB67866 [Arabidopsis
thaliana]; similar to 40S ribosomal protein SA (P40)
GB:O65751 [Cicer arietinum]
Length = 332
Score = 159 bits (387), Expect = 7e-40
Identities = 73/132 (55%), Positives = 91/132 (68%)
Frame = +1
Query: 91 EEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXXXXXXXXEDP 270
E D+ ML+A HLG +N N+QME YV+KRR DG ++INL +TW+K E+P
Sbjct: 17 EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76
Query: 271 ADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIV*DPAQDH 450
D+ V S+R +GQRAVLKFA +TG IAGR TPG FTNQ+Q +F EPRLLI+ DP DH
Sbjct: 77 KDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDH 136
Query: 451 QPITEASYVNIP 486
QPI E + NIP
Sbjct: 137 QPIKEGALGNIP 148
>At1g80540.1 68414.m09441 expressed protein ; expression supported
by MPSS
Length = 481
Score = 31.9 bits (69), Expect = 0.24
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 279 HISWILHGDNSTSSEYKLFPCTPKINYVRT 190
H + + G N T+S Y PC P +NY+RT
Sbjct: 79 HFNIYVDGWNVTNSHYIAPPCNPSLNYLRT 108
>At4g03940.1 68417.m00557 expressed protein
Length = 310
Score = 27.1 bits (57), Expect = 6.8
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +1
Query: 64 GGLDLLALSEEDVTKM--LAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTW 222
G L LL S+E K + T +G ++FQ+ Y+R G G + + RR+W
Sbjct: 134 GVLALLQESQEKEAKTFKMYEATIVGTNYISFQINELNYRREGIGRN-LPRRRSW 187
>At2g07020.1 68415.m00803 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 700
Score = 26.6 bits (56), Expect = 9.0
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +1
Query: 367 TPGAFTNQIQAAFREPRLLIV*DPAQDHQPITEA 468
TP TNQ++ A E + DP PI EA
Sbjct: 620 TPMGLTNQVEKAIEEGNFAKILDPLVTDWPIEEA 653
>At1g07150.1 68414.m00761 protein kinase family protein contains
eukaryotic protein kinase domain, INTERPRO:IPR000719
Length = 499
Score = 26.6 bits (56), Expect = 9.0
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = -1
Query: 408 AECGLDLVSKCTRSETSSNWCCASVGSKFKHSTLAKC 298
+E G D + KC + + + W C + +H L++C
Sbjct: 249 SEIGRDFLEKCLKRDPNQRWSCDQL---LQHPFLSQC 282
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,317,462
Number of Sequences: 28952
Number of extensions: 196682
Number of successful extensions: 391
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -