Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_N21
(421 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P48810 Cluster: Heterogeneous nuclear ribonucleoprotein... 45 7e-04
UniRef50_Q86ER1 Cluster: Clone ZZD1516 mRNA sequence; n=2; Schis... 37 0.19
UniRef50_Q66IT0 Cluster: MGC84815 protein; n=1; Xenopus laevis|R... 35 0.77
UniRef50_UPI00005A10B6 Cluster: PREDICTED: similar to Heterogene... 33 3.1
UniRef50_P09651 Cluster: Heterogeneous nuclear ribonucleoprotein... 33 3.1
UniRef50_Q8NFG3 Cluster: BX1; n=4; Mammalia|Rep: BX1 - Homo sapi... 32 5.4
UniRef50_P51991 Cluster: Heterogeneous nuclear ribonucleoprotein... 32 5.4
UniRef50_Q5TTQ2 Cluster: ENSANGP00000026814; n=3; Endopterygota|... 31 9.5
UniRef50_Q54U48 Cluster: Putative uncharacterized protein; n=1; ... 31 9.5
UniRef50_Q9JJW6 Cluster: RNA and export factor-binding protein 2... 31 9.5
>UniRef50_P48810 Cluster: Heterogeneous nuclear ribonucleoprotein
87F; n=16; Coelomata|Rep: Heterogeneous nuclear
ribonucleoprotein 87F - Drosophila melanogaster (Fruit
fly)
Length = 385
Score = 44.8 bits (101), Expect = 7e-04
Identities = 20/29 (68%), Positives = 22/29 (75%)
Frame = +1
Query: 52 FGNYNQQSYGGGPTRNQAYGGNNRAAPYN 138
FGN QQSYGGGP RN + GNNR APY+
Sbjct: 316 FGNEYQQSYGGGPQRNSNF-GNNRPAPYS 343
>UniRef50_Q86ER1 Cluster: Clone ZZD1516 mRNA sequence; n=2;
Schistosoma japonicum|Rep: Clone ZZD1516 mRNA sequence -
Schistosoma japonicum (Blood fluke)
Length = 313
Score = 36.7 bits (81), Expect = 0.19
Identities = 17/29 (58%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +1
Query: 52 FGNY-NQQSYGGGPTRNQAYGGNNRAAPY 135
FG+Y NQQ+Y GGP R GG R APY
Sbjct: 278 FGHYGNQQNYAGGPMRGGPPGGYQRNAPY 306
>UniRef50_Q66IT0 Cluster: MGC84815 protein; n=1; Xenopus laevis|Rep:
MGC84815 protein - Xenopus laevis (African clawed frog)
Length = 291
Score = 34.7 bits (76), Expect = 0.77
Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +1
Query: 52 FGNYNQQSYGGGPTRNQAYGGN--NRAAPY 135
FGNY QQ+YGGGP R + R APY
Sbjct: 254 FGNYQQQAYGGGPMRATPASASQYTRPAPY 283
>UniRef50_UPI00005A10B6 Cluster: PREDICTED: similar to Heterogeneous
nuclear ribonucleoprotein A1 (Helix-destabilizing
protein) (Single-strand binding protein) (hnRNP core
protein A1) (HDP-1) (Topoisomerase-inhibitor
suppressed); n=4; Eutheria|Rep: PREDICTED: similar to
Heterogeneous nuclear ribonucleoprotein A1
(Helix-destabilizing protein) (Single-strand binding
protein) (hnRNP core protein A1) (HDP-1)
(Topoisomerase-inhibitor suppressed) - Canis familiaris
Length = 407
Score = 32.7 bits (71), Expect = 3.1
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 49 DFGNYNQQSYGGGPTRNQAYGGNNRAAPY 135
DFGNYN QS GP + +GG + + PY
Sbjct: 349 DFGNYNNQSSNFGPMKGGNFGGRS-SGPY 376
>UniRef50_P09651 Cluster: Heterogeneous nuclear ribonucleoprotein
A1; n=390; Euteleostomi|Rep: Heterogeneous nuclear
ribonucleoprotein A1 - Homo sapiens (Human)
Length = 372
Score = 32.7 bits (71), Expect = 3.1
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 49 DFGNYNQQSYGGGPTRNQAYGGNNRAAPY 135
DFGNYN QS GP + +GG + + PY
Sbjct: 314 DFGNYNNQSSNFGPMKGGNFGGRS-SGPY 341
>UniRef50_Q8NFG3 Cluster: BX1; n=4; Mammalia|Rep: BX1 - Homo sapiens
(Human)
Length = 63
Score = 31.9 bits (69), Expect = 5.4
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +1
Query: 49 DFGNYN-QQSYGGGPTRNQAYGGNNRAAPY 135
DFGNY+ QQ GP + ++GG + +PY
Sbjct: 16 DFGNYSGQQQSNYGPMKGGSFGGRSSGSPY 45
>UniRef50_P51991 Cluster: Heterogeneous nuclear ribonucleoprotein
A3; n=98; Coelomata|Rep: Heterogeneous nuclear
ribonucleoprotein A3 - Homo sapiens (Human)
Length = 378
Score = 31.9 bits (69), Expect = 5.4
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +1
Query: 49 DFGNYN-QQSYGGGPTRNQAYGGNNRAAPY 135
DFGNY+ QQ GP + ++GG + +PY
Sbjct: 331 DFGNYSGQQQSNYGPMKGGSFGGRSSGSPY 360
>UniRef50_Q5TTQ2 Cluster: ENSANGP00000026814; n=3;
Endopterygota|Rep: ENSANGP00000026814 - Anopheles
gambiae str. PEST
Length = 358
Score = 31.1 bits (67), Expect = 9.5
Identities = 17/30 (56%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +1
Query: 49 DFGNYNQQSYGGGPTRNQAYGG-NNRAAPY 135
+FGN QQ Y GP R A G N RAAPY
Sbjct: 323 EFGNNYQQGYNAGPVR--AGGNFNQRAAPY 350
>UniRef50_Q54U48 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 678
Score = 31.1 bits (67), Expect = 9.5
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +1
Query: 46 QDFGNY-NQQSYGGGPTRNQAYGGNNRAAPY 135
Q +GNY NQ YG P AYGG +PY
Sbjct: 198 QQYGNYSNQPQYGNYPQFMPAYGGMPMYSPY 228
>UniRef50_Q9JJW6 Cluster: RNA and export factor-binding protein 2;
n=18; Bilateria|Rep: RNA and export factor-binding
protein 2 - Mus musculus (Mouse)
Length = 218
Score = 31.1 bits (67), Expect = 9.5
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Frame = +1
Query: 58 NYNQQSYGGGPTRNQ---AYGGNNRAAPYN 138
N + + GGGP RN+ A GG NR APY+
Sbjct: 18 NQRRVNRGGGPRRNRPAIARGGRNRPAPYS 47
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 334,008,494
Number of Sequences: 1657284
Number of extensions: 5156521
Number of successful extensions: 13148
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13138
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 19389441554
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -