Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_N21
         (421 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomy...    26   2.7  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    25   6.3  

>SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 82  HRNSAGCNCQSLGFHPNL 29
           HR +A   C++LGFHPN+
Sbjct: 167 HRRAA-LPCEALGFHPNV 183


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 46  QDFGNYNQQSYGGGPTRNQAYGGNNR 123
           Q++GN N Q+Y      N + GGN++
Sbjct: 619 QNYGNNNNQNYNN--NNNSSQGGNSQ 642


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,323,541
Number of Sequences: 5004
Number of extensions: 20051
Number of successful extensions: 63
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)