Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_N21
         (421 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0021 - 133549-133628,133780-133824,133850-133858,134513-13...    27   4.6  
08_02_1093 - 24271826-24273427                                         27   6.1  

>07_01_0021 -
           133549-133628,133780-133824,133850-133858,134513-134656,
           140098-140391,141324-141908,142034-142198,142364-142406
          Length = 454

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -1

Query: 319 GVSSAPE--RTAYTSTVNSALLVYLARNSLIKTSPLCP 212
           G SSA +  R      VN  L+ ++ RN L   SP+CP
Sbjct: 246 GPSSAKQMLRQISNCNVNGVLVFFMLRNCLRFNSPVCP 283


>08_02_1093 - 24271826-24273427
          Length = 533

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +3

Query: 300 SGALDTPHGLDARPHRSPQDTDRHVAGAEA 389
           +GA  +    DA PHRS      HVAGA A
Sbjct: 124 TGAFASQSSYDAAPHRSLSYHGFHVAGAAA 153


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,322,712
Number of Sequences: 37544
Number of extensions: 154218
Number of successful extensions: 412
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)