Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_N21
         (421 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_57887| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  
SB_18386| Best HMM Match : CH (HMM E-Value=2.8e-26)                    27   6.3  
SB_43689| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  
SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  

>SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1649

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 141  HIIRCSSVITTVCLIPCGPSTVT 73
            HI   S+ ITT+C++PCG   VT
Sbjct: 1573 HIYPHSNEITTLCVLPCGRYLVT 1595


>SB_57887| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 542

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 405 NLNECEPRLQLHVYRYPEGFYVVSHL 328
           NLNE  PR+Q    R P   Y +SH+
Sbjct: 106 NLNEMPPRIQCMRIRLPRFEYTISHV 131


>SB_18386| Best HMM Match : CH (HMM E-Value=2.8e-26)
          Length = 589

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 294 VRSGALDTPHGLDARPHRSPQDTDR 368
           V S   D+   LDARPHRS ++ D+
Sbjct: 362 VESALQDSWDELDARPHRSREERDK 386


>SB_43689| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 416

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = +3

Query: 294 VRSGALDTPHGLDARPHRSPQDTDRHVAGAEAHTHLDY 407
           +R+ + D P     R H  P      V G E  +H+++
Sbjct: 102 IRANSQDEPQRTSVRTHAPPGGASHIVLGGEGESHVEF 139


>SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 314

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 55  GNYNQQSYGGGPTRNQAYGGNNRAAP 132
           G Y+Q++ G GP+R    GG  R AP
Sbjct: 282 GQYSQEASGYGPSRGT--GGRGRGAP 305


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,488,685
Number of Sequences: 59808
Number of extensions: 172342
Number of successful extensions: 546
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)