Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_N21
         (421 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81555-7|CAB04518.1|  561|Caenorhabditis elegans Hypothetical pr...    29   1.4  
AC024214-10|AAF36080.1|  778|Caenorhabditis elegans Calpain fami...    26   1.6  
AF026213-6|AAB71307.1|  655|Caenorhabditis elegans Temporarily a...    27   5.5  
AF003130-1|AAB54124.2|  423|Caenorhabditis elegans Hypothetical ...    27   7.2  

>Z81555-7|CAB04518.1|  561|Caenorhabditis elegans Hypothetical
           protein F58E10.3a protein.
          Length = 561

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 55  GNYNQQSYGGGPTRNQAYGGNNRAAP 132
           G+ ++  YGGG  + + YGGN+  AP
Sbjct: 516 GSNSRGRYGGGGFQKRGYGGNDNFAP 541


>AC024214-10|AAF36080.1|  778|Caenorhabditis elegans Calpain family
           protein 7 protein.
          Length = 778

 Score = 25.8 bits (54), Expect(2) = 1.6
 Identities = 11/17 (64%), Positives = 13/17 (76%), Gaps = 3/17 (17%)
 Frame = +1

Query: 46  QDFGN---YNQQSYGGG 87
           QD+GN   Y QQ+YGGG
Sbjct: 66  QDYGNQQDYQQQNYGGG 82



 Score = 21.4 bits (43), Expect(2) = 1.6
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +1

Query: 61  YNQQSYGGGPTRNQAYGGNNRAAP 132
           Y QQ Y GG   ++ Y     A P
Sbjct: 88  YQQQDYQGGYDDSEQYEEQEEAEP 111


>AF026213-6|AAB71307.1|  655|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 123 protein.
          Length = 655

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 366 YRYPEGFYVVSHLDHEVY 313
           Y+ P  FY+ +H+D E+Y
Sbjct: 186 YKTPNNFYIFNHVDIEIY 203


>AF003130-1|AAB54124.2|  423|Caenorhabditis elegans Hypothetical
           protein F55A12.6 protein.
          Length = 423

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
 Frame = +1

Query: 55  GNYNQQS--YGGGPTRNQAYGGNN 120
           G YNQ +  YGG    NQ Y GNN
Sbjct: 155 GYYNQYNGGYGGNGYYNQYYNGNN 178


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,496,369
Number of Sequences: 27780
Number of extensions: 118396
Number of successful extensions: 343
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)