Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_N20
         (496 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha su...   153   1e-38
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   2.7  
SPAP27G11.07c |||serine/threonine protein kinase |Schizosaccharo...    25   6.3  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    25   8.3  

>SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score =  153 bits (371), Expect = 1e-38
 Identities = 75/132 (56%), Positives = 94/132 (71%)
 Frame = +2

Query: 95  SCRFYQEKYPEVEDVVMVNVRSIAEMGAYVHLLEYNNIEGMXXXXXXXXXXXXXXNKLIR 274
           SCR Y+ ++PEV+++V+VNVR I EMGAYV LLEY+NIEGM               K IR
Sbjct: 5   SCRMYENRFPEVDELVVVNVRQIQEMGAYVKLLEYDNIEGMVLLSELSRRRIRSVQKHIR 64

Query: 275 VGKTEPVVVIRVDKEKGYIDLSKRRVSAEDIDKCTERYAKAKAVNSILRHVAELLHYESS 454
           VG+ E VVV+RVDKEKGYIDLSKRRVS ED+ KC ER+ K+KAV+SI+RH+AE    + +
Sbjct: 65  VGRNEVVVVLRVDKEKGYIDLSKRRVSPEDVVKCEERFNKSKAVHSIMRHIAE----KHN 120

Query: 455 EQLEELYKTTAW 490
             LE +Y T  W
Sbjct: 121 VPLETMYTTIGW 132


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 9/41 (21%), Positives = 25/41 (60%)
 Frame = -1

Query: 199 VLQQVDVRAHLSYRPHVYHHYIFYFWILFLIKPTRKWHLVF 77
           +L   +V+ H  +  HV+  ++F+ + +F+I    +++++F
Sbjct: 127 ILSFSNVKNHNRFYAHVFLSWLFFGFTIFIIYRELRYYVIF 167


>SPAP27G11.07c |||serine/threonine protein kinase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 238

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +2

Query: 326 YIDLSKRRVSAEDIDKCTERYAKAKAVNSILRHVAELLHY 445
           +ID     VS  + DK  + Y   +A++S L     L H+
Sbjct: 166 FIDFGLGSVSESEEDKAVDIYVLERALSSTLPESESLFHH 205


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
            Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +2

Query: 263  KLIRVGKTEPVVVIRVDKEKGYIDLSKR 346
            +L++VG+T   V+I +D+    +DLS R
Sbjct: 1091 QLLQVGQTVEGVIISLDEANFMVDLSLR 1118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,885,183
Number of Sequences: 5004
Number of extensions: 34199
Number of successful extensions: 106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)