Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_N20
         (496 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1773 - 29422660-29422806,29423103-29423201,29423811-294239...   144   3e-35
03_02_0677 + 10343089-10343604,10344316-10344462,10344539-103446...   144   3e-35
12_01_0612 - 5044639-5044858,5045010-5045167,5045440-5045684,504...    28   4.7  
09_06_0292 + 22075647-22075691,22077394-22077507,22077602-220778...    27   8.3  

>07_03_1773 -
           29422660-29422806,29423103-29423201,29423811-29423915,
           29423990-29424136,29424436-29424954
          Length = 338

 Score =  144 bits (350), Expect = 3e-35
 Identities = 73/136 (53%), Positives = 90/136 (66%), Gaps = 1/136 (0%)
 Frame = +2

Query: 86  MP-LSCRFYQEKYPEVEDVVMVNVRSIAEMGAYVHLLEYNNIEGMXXXXXXXXXXXXXXN 262
           MP L CR Y+  +PEVE  VM+ V+ +AE+GAYV LLEYNNIEGM               
Sbjct: 1   MPNLECRMYEAPFPEVETAVMIQVKHLAELGAYVSLLEYNNIEGMILYSELSRRRIRSIP 60

Query: 263 KLIRVGKTEPVVVIRVDKEKGYIDLSKRRVSAEDIDKCTERYAKAKAVNSILRHVAELLH 442
            LI+VG+ EP VV+RVD +KGYIDLSKRRVS  D   C +RY+K+K V+SI+RH+AE LH
Sbjct: 61  SLIKVGRQEPAVVLRVDHDKGYIDLSKRRVSHHDRRTCEDRYSKSKFVHSIMRHLAETLH 120

Query: 443 YESSEQLEELYKTTAW 490
            +    LE LY   AW
Sbjct: 121 LD----LEPLYHRIAW 132


>03_02_0677 +
           10343089-10343604,10344316-10344462,10344539-10344643,
           10345411-10345509,10345662-10345814
          Length = 339

 Score =  144 bits (350), Expect = 3e-35
 Identities = 71/136 (52%), Positives = 92/136 (67%), Gaps = 1/136 (0%)
 Frame = +2

Query: 86  MP-LSCRFYQEKYPEVEDVVMVNVRSIAEMGAYVHLLEYNNIEGMXXXXXXXXXXXXXXN 262
           MP L CR Y+ ++PEV+  VM+ V+ IA+MGAYV LLEYNNIEGM              +
Sbjct: 1   MPNLECRMYEPRFPEVDAAVMIQVKHIADMGAYVSLLEYNNIEGMILFSELSRRRIRSIS 60

Query: 263 KLIRVGKTEPVVVIRVDKEKGYIDLSKRRVSAEDIDKCTERYAKAKAVNSILRHVAELLH 442
            LI+VG+ EP +V+RVD++KGYIDLSKRRVS E+   C +RY K+K V+SI+RHVAE L 
Sbjct: 61  SLIKVGRQEPAIVLRVDRDKGYIDLSKRRVSEEEAHACEDRYNKSKLVHSIMRHVAETLG 120

Query: 443 YESSEQLEELYKTTAW 490
            +    LE LY+   W
Sbjct: 121 ID----LEPLYQRIGW 132


>12_01_0612 -
           5044639-5044858,5045010-5045167,5045440-5045684,
           5046006-5046294,5047540-5048561,5049320-5049389
          Length = 667

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 362 DID-KCTERYAKAKAVNSILRHVAELLHYESSEQLEELYKTTAWH 493
           D D K +E+  + +  + +L+ + ELL   S EQ+ E  KT  WH
Sbjct: 243 DFDSKASEKNFETRKRHKLLKSIFELLEKLSVEQINE--KTRQWH 285


>09_06_0292 +
           22075647-22075691,22077394-22077507,22077602-22077841,
           22077926-22078003,22078094-22078162,22078420-22078545,
           22079108-22079188,22079272-22079460,22079597-22080434,
           22082290-22082411,22082482-22082701,22082910-22083055,
           22083260-22083566,22083886-22084136,22084294-22084533,
           22084930-22085238
          Length = 1124

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +2

Query: 305 RVDKEKGYIDLSKRRVSAEDIDKCTERYAKAKAVNSILRHV 427
           R +K K  + +S R ++  D ++  +  AKA+A +S+LR V
Sbjct: 340 RANKSKKPVKISARSLAKLDRNEVMKAAAKARASSSVLRPV 380


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,604,571
Number of Sequences: 37544
Number of extensions: 195607
Number of successful extensions: 458
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)