Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_N20
         (496 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52918| Best HMM Match : No HMM Matches (HMM E-Value=.)             191   3e-49
SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     29   1.6  
SB_13878| Best HMM Match : Vicilin_N (HMM E-Value=0.2)                 27   8.5  

>SB_52918| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 313

 Score =  191 bits (465), Expect = 3e-49
 Identities = 93/137 (67%), Positives = 107/137 (78%)
 Frame = +2

Query: 86  MPLSCRFYQEKYPEVEDVVMVNVRSIAEMGAYVHLLEYNNIEGMXXXXXXXXXXXXXXNK 265
           MP +CRFY+  YPEV+DVVMVNVRSIAEMGAYV+LLEYNNIEGM              NK
Sbjct: 1   MP-NCRFYKHIYPEVDDVVMVNVRSIAEMGAYVNLLEYNNIEGMILLSELSRRRIRSINK 59

Query: 266 LIRVGKTEPVVVIRVDKEKGYIDLSKRRVSAEDIDKCTERYAKAKAVNSILRHVAELLHY 445
           LIRVG+ E VVVIRVDKEKGYIDLSKRRVS E++ KC E++ KAK V SILRH AE+L Y
Sbjct: 60  LIRVGRNECVVVIRVDKEKGYIDLSKRRVSPEEVKKCEEKFTKAKTVYSILRHCAEILGY 119

Query: 446 ESSEQLEELYKTTAWHF 496
           E+ +Q EELY+ TAW+F
Sbjct: 120 ETDKQFEELYEKTAWYF 136


>SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1449

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
 Frame = +2

Query: 287  EPVVV-IRVDKEKGYIDLSKRRVSAEDIDKCTERYAKAKAVNS---ILRHVAELLHYESS 454
            EPV   ++ DK+K  ID S  + SA+D D  TE+ ++          L ++ +    +S 
Sbjct: 1361 EPVSSPLKADKDKTEIDASSGQNSADDADGVTEKPSEKSTSRKEYVELENIVDYTREDSQ 1420

Query: 455  EQLEELYKTT 484
            +Q E  ++ T
Sbjct: 1421 KQTENEHRQT 1430


>SB_13878| Best HMM Match : Vicilin_N (HMM E-Value=0.2)
          Length = 611

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
 Frame = +2

Query: 269 IRVGKTEPVVVIRVDKEKGYIDLSKRRVSAEDIDKCTERYAKAKAVNSILRHVAE---LL 439
           IR  K + ++  R  +EK   D    R   +D +  T R  KAKA    +R V      L
Sbjct: 260 IRENKDKEIMTSR--REKAKADAEYMRQENKDKEIMTSRREKAKADAEYMRQVVADQLKL 317

Query: 440 HYESSEQLEELYKTTA 487
             E   +L+ LY+  A
Sbjct: 318 EREREAELDMLYRDEA 333


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,933,683
Number of Sequences: 59808
Number of extensions: 242360
Number of successful extensions: 657
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1062812967
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)