Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_N20
         (496 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

J02645-1|AAA52373.1|  315|Homo sapiens EIF2 protein.                  189   4e-48
BC002513-1|AAH02513.1|  315|Homo sapiens EIF2S1 protein protein.      189   4e-48

>J02645-1|AAA52373.1|  315|Homo sapiens EIF2 protein.
          Length = 315

 Score =  189 bits (461), Expect = 4e-48
 Identities = 94/138 (68%), Positives = 105/138 (76%), Gaps = 1/138 (0%)
 Frame = +2

Query: 86  MP-LSCRFYQEKYPEVEDVVMVNVRSIAEMGAYVHLLEYNNIEGMXXXXXXXXXXXXXXN 262
           MP LSCRFYQ K+PEVEDVVMVNVRSIAEMGAYV LLEYNNIEGM              N
Sbjct: 1   MPGLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSIN 60

Query: 263 KLIRVGKTEPVVVIRVDKEKGYIDLSKRRVSAEDIDKCTERYAKAKAVNSILRHVAELLH 442
           KLIR+G+ E VVVIRVDKEKGYIDLSKRRVS E+  KC +++ K+K V SILRHVAE+L 
Sbjct: 61  KLIRIGRNECVVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLE 120

Query: 443 YESSEQLEELYKTTAWHF 496
           Y   EQLE L++ TAW F
Sbjct: 121 YTKDEQLESLFQRTAWVF 138


>BC002513-1|AAH02513.1|  315|Homo sapiens EIF2S1 protein protein.
          Length = 315

 Score =  189 bits (461), Expect = 4e-48
 Identities = 94/138 (68%), Positives = 105/138 (76%), Gaps = 1/138 (0%)
 Frame = +2

Query: 86  MP-LSCRFYQEKYPEVEDVVMVNVRSIAEMGAYVHLLEYNNIEGMXXXXXXXXXXXXXXN 262
           MP LSCRFYQ K+PEVEDVVMVNVRSIAEMGAYV LLEYNNIEGM              N
Sbjct: 1   MPGLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSIN 60

Query: 263 KLIRVGKTEPVVVIRVDKEKGYIDLSKRRVSAEDIDKCTERYAKAKAVNSILRHVAELLH 442
           KLIR+G+ E VVVIRVDKEKGYIDLSKRRVS E+  KC +++ K+K V SILRHVAE+L 
Sbjct: 61  KLIRIGRNECVVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLE 120

Query: 443 YESSEQLEELYKTTAWHF 496
           Y   EQLE L++ TAW F
Sbjct: 121 YTKDEQLESLFQRTAWVF 138


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,845,180
Number of Sequences: 237096
Number of extensions: 1179697
Number of successful extensions: 9797
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9797
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4479766258
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)