Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_N20
         (496 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-10|AAK27873.2|  342|Caenorhabditis elegans Hypothetical...   172   1e-43
AC084197-28|AAO38573.1|  350|Caenorhabditis elegans Serpentine r...    31   0.61 
AC084155-5|AAK84606.1|  433|Caenorhabditis elegans Hypothetical ...    27   5.7  
U23171-3|AAC46706.1| 1020|Caenorhabditis elegans Hypothetical pr...    27   9.9  
AF247970-1|AAF66431.1|  323|Caenorhabditis elegans cell cycle ch...    27   9.9  

>AC087079-10|AAK27873.2|  342|Caenorhabditis elegans Hypothetical
           protein Y37E3.10 protein.
          Length = 342

 Score =  172 bits (418), Expect = 1e-43
 Identities = 79/135 (58%), Positives = 101/135 (74%)
 Frame = +2

Query: 92  LSCRFYQEKYPEVEDVVMVNVRSIAEMGAYVHLLEYNNIEGMXXXXXXXXXXXXXXNKLI 271
           + CRFY+ ++P+VE+ V+ NV+ IA+MGAYV L EYN+ EGM              NKLI
Sbjct: 1   MKCRFYENQFPDVEETVVANVKMIADMGAYVRLSEYNDKEGMILLSELSRRRIRSVNKLI 60

Query: 272 RVGKTEPVVVIRVDKEKGYIDLSKRRVSAEDIDKCTERYAKAKAVNSILRHVAELLHYES 451
           RVG++E VVVIRVDK+KGYIDLSKRRV  +D+ +C ER+A AK VNSILRHVAE + Y +
Sbjct: 61  RVGRSESVVVIRVDKDKGYIDLSKRRVYQKDLKQCDERFANAKMVNSILRHVAEQVGYTT 120

Query: 452 SEQLEELYKTTAWHF 496
            E+LE+LY+ TAWHF
Sbjct: 121 DEELEDLYQKTAWHF 135


>AC084197-28|AAO38573.1|  350|Caenorhabditis elegans Serpentine
           receptor, class v protein13 protein.
          Length = 350

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -1

Query: 214 ALNIVVLQQVDVRAHLSYR--PHVYHHYIFYFWILFLIKPTRKWHLVFIFF 68
           +L   VL QV +R HLS      +    I  FW +F++  ++K  LV IFF
Sbjct: 293 SLRKYVLYQVGLRKHLSVNNTAMITVQSIVSFWFIFILLYSKKSLLVVIFF 343


>AC084155-5|AAK84606.1|  433|Caenorhabditis elegans Hypothetical
           protein Y45G5AM.7 protein.
          Length = 433

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = +2

Query: 272 RVGKTEPVVVIRVDKEKGYI--DLSKRRVS-AEDIDKCTERYAKAKAVNSILRHVAELLH 442
           RVGK + VV+ +V+K  G+I  +  +R +  A +++   E  +   A N  L    + LH
Sbjct: 120 RVGKAQIVVMEKVEKATGHIIQEFHERELDLARNVEILQEENSNLTAKNEKLEETVDDLH 179


>U23171-3|AAC46706.1| 1020|Caenorhabditis elegans Hypothetical
           protein K02A2.3 protein.
          Length = 1020

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 269 IRVGKTEPVVVIRVDKEKGYIDLSKRRVSAEDIDKCTERYAKAK 400
           ++ G  + + ++R+D E   +DL    VS E ++K  E   K K
Sbjct: 824 MKAGLQKYIYMLRIDAELFIVDLLDMEVSDEVVEKAAEVERKQK 867


>AF247970-1|AAF66431.1|  323|Caenorhabditis elegans cell cycle
           checkpoint protein Rad9 protein.
          Length = 323

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 92  LSCRFYQEKYPEVEDVVMVNVRSIAEMGAYVHLLEYN 202
           +SCR + EK  E  D+       + EMG+ +H   YN
Sbjct: 121 ISCRIF-EKLAEFSDIERTIHAKLREMGSMLHKPTYN 156


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,387,947
Number of Sequences: 27780
Number of extensions: 188944
Number of successful extensions: 498
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)