Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_N18
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14608| Best HMM Match : AhpC-TSA (HMM E-Value=0)                   239   8e-64
SB_22073| Best HMM Match : No HMM Matches (HMM E-Value=.)             128   4e-30
SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012)             115   3e-26
SB_33971| Best HMM Match : AhpC-TSA (HMM E-Value=2e-06)                35   0.038
SB_35139| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.27 
SB_16796| Best HMM Match : Multi_Drug_Res (HMM E-Value=0.96)           29   2.5  
SB_1753| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.4  
SB_7856| Best HMM Match : F5_F8_type_C (HMM E-Value=3.6e-11)           28   5.8  
SB_57621| Best HMM Match : Spermine_synth (HMM E-Value=0.1)            27   7.6  
SB_10820| Best HMM Match : Sulfotransfer_1 (HMM E-Value=0)             27   7.6  

>SB_14608| Best HMM Match : AhpC-TSA (HMM E-Value=0)
          Length = 265

 Score =  239 bits (586), Expect = 8e-64
 Identities = 114/176 (64%), Positives = 140/176 (79%), Gaps = 4/176 (2%)
 Frame = +1

Query: 31  HFEQTIINFNRMPLQLT---KPAPQFKTTAV-VNGEFKDVALSDFKGKYVVLFFYPLDFT 198
           H  + +++F+R  +  T   KPAP F  TAV  +GEF D+ LSD+KGKYVVLFFYPLDFT
Sbjct: 35  HLAKRMMSFSRADMSKTAIQKPAPAFSGTAVNKHGEFIDLKLSDYKGKYVVLFFYPLDFT 94

Query: 199 FVCPTEIIAFSERADDFRKIGCEVIAASTDSHFTHLAWINTSRKQGGLGPMNIPIISDKS 378
           FVCPTEIIAFS+R D+F+ I CEVIA S DS ++HLAW N  RK+GG+G +NIPI+SD +
Sbjct: 95  FVCPTEIIAFSDRVDEFKAINCEVIACSVDSEYSHLAWTNVPRKKGGIGNINIPILSDLT 154

Query: 379 HRISRDYGVLDEETGIPFRGLFIIDDKQNLRQITVNDLPVGRSVEENLRLVQAFQF 546
            +IS+DYGVL E+ G+  RGLFIIDDK  LRQIT+NDLPVGRSV+E LRL+QAFQF
Sbjct: 155 KQISKDYGVLLEDQGVALRGLFIIDDKGILRQITINDLPVGRSVDETLRLIQAFQF 210


>SB_22073| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 237

 Score =  128 bits (308), Expect = 4e-30
 Identities = 56/80 (70%), Positives = 68/80 (85%)
 Frame = +1

Query: 73  QLTKPAPQFKTTAVVNGEFKDVALSDFKGKYVVLFFYPLDFTFVCPTEIIAFSERADDFR 252
           Q++KPAP ++ TAVVNGEFK++ LSDF+GKY+V FFYPLDFTFVCPTEIIAFS+R ++FR
Sbjct: 55  QISKPAPFWEGTAVVNGEFKELKLSDFEGKYLVFFFYPLDFTFVCPTEIIAFSDRIEEFR 114

Query: 253 KIGCEVIAASTDSHFTHLAW 312
            I  EV+  S DS FTHLAW
Sbjct: 115 AINTEVVGCSVDSVFTHLAW 134



 Score = 65.7 bits (153), Expect = 2e-11
 Identities = 31/37 (83%), Positives = 34/37 (91%)
 Frame = +1

Query: 436 GLFIIDDKQNLRQITVNDLPVGRSVEENLRLVQAFQF 546
           GLFIIDDK  LRQIT+NDLPVGRSV+E LRLVQAFQ+
Sbjct: 135 GLFIIDDKGVLRQITMNDLPVGRSVDETLRLVQAFQY 171


>SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012)
          Length = 704

 Score =  115 bits (276), Expect = 3e-26
 Identities = 53/77 (68%), Positives = 65/77 (84%)
 Frame = +1

Query: 316 NTSRKQGGLGPMNIPIISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQITVNDLP 495
           N  RK+GG+G +NIPI+SD + +IS+DYGVL E+ G+  RGLFIIDDK  LRQIT+NDLP
Sbjct: 3   NVPRKKGGIGNINIPILSDLTKQISKDYGVLLEDQGVALRGLFIIDDKGILRQITINDLP 62

Query: 496 VGRSVEENLRLVQAFQF 546
           VGRSV+E LRL+QAFQF
Sbjct: 63  VGRSVDETLRLIQAFQF 79


>SB_33971| Best HMM Match : AhpC-TSA (HMM E-Value=2e-06)
          Length = 160

 Score = 35.1 bits (77), Expect = 0.038
 Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 11/99 (11%)
 Frame = +1

Query: 280 STDSHFTHLAWINTSRKQG-----GLGPMNIPIISDKSHRISRDYGVLD----EETGIPF 432
           S D   +H  W+    K            N PII+D+   ++   G++D    +  G+P 
Sbjct: 5   SCDDAESHRGWVKDITKYNLEQNKSSAKFNYPIIADERRELAVKLGMVDPDEKDSKGLPL 64

Query: 433 --RGLFIIDDKQNLRQITVNDLPVGRSVEENLRLVQAFQ 543
             R +FII   + L+   +     GR+ +E LR++ + Q
Sbjct: 65  TCRAVFIIGPDKKLKLSILYPATTGRNFDEILRVIDSLQ 103


>SB_35139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 56

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 14/17 (82%), Positives = 16/17 (94%)
 Frame = +1

Query: 496 VGRSVEENLRLVQAFQF 546
           VGRSV+E LRLVQAFQ+
Sbjct: 1   VGRSVDETLRLVQAFQY 17


>SB_16796| Best HMM Match : Multi_Drug_Res (HMM E-Value=0.96)
          Length = 725

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = +1

Query: 268 VIAASTDSHFTHLAWINTSRKQGGLGPMNIPIISDKSHRISRDYGVLDEETGIPF 432
           VI   TDS ++    I+   + GGLG     +IS +     RD G+   ETG+ F
Sbjct: 65  VILGPTDSLYSECTLIDKGWRTGGLGEGLNGMISTRKRARKRDLGM---ETGLEF 116


>SB_1753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 377

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 123 SVDDGCRLELWSWLSQLQR 67
           ++D  CRL LW W+ +LQR
Sbjct: 147 NLDCNCRLTLWFWIWRLQR 165


>SB_7856| Best HMM Match : F5_F8_type_C (HMM E-Value=3.6e-11)
          Length = 334

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +1

Query: 370 DKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQI--TVND 489
           D    ++  Y V+D+ET I   GL  I +K+N +++  T ND
Sbjct: 275 DTIREVNCRYNVVDKETRIKVTGLLTIKEKKNGKELYRTRND 316


>SB_57621| Best HMM Match : Spermine_synth (HMM E-Value=0.1)
          Length = 627

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
 Frame = -3

Query: 486 VDGDLAEVLFVVDDEESAEGDAGLLVEDAVIARDAVRLVAYYRYVHG--TETALFTGGVD 313
           V GD+     V +   S  GD   +VED  I  D  R + +    HG  +E  LFT    
Sbjct: 329 VGGDIGIRKTVHEGSSSLSGD--YIVEDITIGEDTFRRLVFLINPHGIQSEAKLFTAKDG 386

Query: 312 PSQVGEV 292
             + G +
Sbjct: 387 KKKAGHI 393


>SB_10820| Best HMM Match : Sulfotransfer_1 (HMM E-Value=0)
          Length = 922

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 148 DFKGKYVVLFFYPLDFTFVCPTEIIAFSERAD 243
           DF+GK+++L+F       +CP E+   +E  D
Sbjct: 772 DFRGKWLLLYFGFTHCPDICPDELEKMAEAID 803


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,193,827
Number of Sequences: 59808
Number of extensions: 288044
Number of successful extensions: 925
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)