Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_N18
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U37429-15|AAN63412.1|  195|Caenorhabditis elegans Peroxiredoxin ...   259   8e-70
Z32683-2|CAA83619.1|  226|Caenorhabditis elegans Hypothetical pr...   216   8e-57
AC024761-15|AAM97968.1|  231|Caenorhabditis elegans Hypothetical...    58   3e-09
AL132904-14|CAC35847.2|  258|Caenorhabditis elegans Hypothetical...    30   1.3  
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ...    28   3.9  
Z31590-1|CAA83461.1|  605|Caenorhabditis elegans Hypothetical pr...    28   5.1  
AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical ...    28   5.1  
Z75527-4|CAA99779.2|  316|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z29095-4|CAA82348.3|  444|Caenorhabditis elegans Hypothetical pr...    27   6.7  
DQ178236-1|ABA18178.1|  316|Caenorhabditis elegans putative low ...    27   6.7  
AF242767-1|AAG36874.1|  258|Caenorhabditis elegans SF2 protein.        27   6.7  
Z81070-10|CAB03004.1|  163|Caenorhabditis elegans Hypothetical p...    27   8.9  

>U37429-15|AAN63412.1|  195|Caenorhabditis elegans Peroxiredoxin
           protein 2 protein.
          Length = 195

 Score =  259 bits (635), Expect = 8e-70
 Identities = 120/155 (77%), Positives = 137/155 (88%)
 Frame = +1

Query: 82  KPAPQFKTTAVVNGEFKDVALSDFKGKYVVLFFYPLDFTFVCPTEIIAFSERADDFRKIG 261
           KPAPQFKT AVV+GEF DV+LSD+KGKYVVLFFYPLDFTFVCPTEIIAFS+RA++F+ I 
Sbjct: 8   KPAPQFKTQAVVDGEFVDVSLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKAIN 67

Query: 262 CEVIAASTDSHFTHLAWINTSRKQGGLGPMNIPIISDKSHRISRDYGVLDEETGIPFRGL 441
             V+AASTDS F+HLAWIN  RK GGLG MNIP+++D +H+ISRDYGVL E+ GI FRGL
Sbjct: 68  TVVLAASTDSVFSHLAWINQPRKHGGLGEMNIPVLADTNHQISRDYGVLKEDEGIAFRGL 127

Query: 442 FIIDDKQNLRQITVNDLPVGRSVEENLRLVQAFQF 546
           FIID  QNLRQIT+NDLPVGRSV+E LRLVQAFQF
Sbjct: 128 FIIDPSQNLRQITINDLPVGRSVDETLRLVQAFQF 162


>Z32683-2|CAA83619.1|  226|Caenorhabditis elegans Hypothetical
           protein R07E5.2 protein.
          Length = 226

 Score =  216 bits (528), Expect = 8e-57
 Identities = 94/160 (58%), Positives = 128/160 (80%)
 Frame = +1

Query: 67  PLQLTKPAPQFKTTAVVNGEFKDVALSDFKGKYVVLFFYPLDFTFVCPTEIIAFSERADD 246
           PL      P FK TAVV+G+FK ++  D+KGK++V+FFYPLDFTFVCPTEIIA+ +RA++
Sbjct: 32  PLGPKNTVPAFKGTAVVDGDFKVISDQDYKGKWLVMFFYPLDFTFVCPTEIIAYGDRANE 91

Query: 247 FRKIGCEVIAASTDSHFTHLAWINTSRKQGGLGPMNIPIISDKSHRISRDYGVLDEETGI 426
           FR +G EV+A S DSHF+HLAW+NT RK GGLG M+IP+++D + +I+  +GVLD+E+G+
Sbjct: 92  FRSLGAEVVACSCDSHFSHLAWVNTPRKDGGLGDMDIPLLADFNKKIADSFGVLDKESGL 151

Query: 427 PFRGLFIIDDKQNLRQITVNDLPVGRSVEENLRLVQAFQF 546
            +RGLF+ID    +R  T NDLPVGRSV+E LR+++AFQF
Sbjct: 152 SYRGLFLIDPSGTVRHTTCNDLPVGRSVDETLRVLKAFQF 191


>AC024761-15|AAM97968.1|  231|Caenorhabditis elegans Hypothetical
           protein Y38C1AA.11 protein.
          Length = 231

 Score = 58.4 bits (135), Expect = 3e-09
 Identities = 43/149 (28%), Positives = 72/149 (48%), Gaps = 11/149 (7%)
 Frame = +1

Query: 130 KDVALSDFKGK-YVVLFFYPLDFTFVCPTEIIAFSERADDFRKIGCEVIAASTDSHFTHL 306
           K+  L ++ G+ +++LF +P DFT VC TE+    + A +FRK   +++A S DS  TH 
Sbjct: 18  KNQTLHNYIGEQWLMLFSHPADFTPVCTTELAELVKLAPEFRKRHVQILAISIDSSETHR 77

Query: 307 AW---INTSRKQGGLGP-MNIPIISDKSHRISRDYGVLD------EETGIPFRGLFIIDD 456
            W   IN+  +    G  +   II+D    I  + G++D      E   +  R + +   
Sbjct: 78  DWAKDINSVAQLSNCGSHLPFEIIADTDRSICTELGMIDPDEMNSEGICLSARAVMLFGP 137

Query: 457 KQNLRQITVNDLPVGRSVEENLRLVQAFQ 543
            + L+   +     GR+  E LR+V   Q
Sbjct: 138 DKKLKSKILYPATFGRNFVEILRMVDGVQ 166


>AL132904-14|CAC35847.2|  258|Caenorhabditis elegans Hypothetical
           protein Y111B2A.18 protein.
          Length = 258

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 24/66 (36%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
 Frame = -3

Query: 447 DEESAEGDAGLLVE--DAVIARDAVRLVAYYRYVHGTETALFTGGVDPSQVGEVRVRGGG 274
           D +S  G A   VE  D   A DAVR    Y +        FT GV P   G   ++ GG
Sbjct: 39  DIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFTRGVGPRGPGGRPLQDGG 98

Query: 273 DHLAPD 256
           DH   D
Sbjct: 99  DHRGGD 104


>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
           protein C08G9.2 protein.
          Length = 2224

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
 Frame = +1

Query: 208 PTEIIAFSERADDFRKIGCEV-IAASTDSHF-THLAWINTSRKQGGLGPMNIPIISDKSH 381
           P E + F ER   F  I C++      D H+ + +A    SR+Q  +     P +  K  
Sbjct: 265 PNEFVPFCERNGRFSSIQCDIQFCWCVDVHYGSEIAGTRISREQRRIDMCREPRLCTKKC 324

Query: 382 RISRDYGVLDEETGIPFRGLFIIDDKQNL 468
                +G + +  G P      +D  +N+
Sbjct: 325 HNQCTHGHVMDIFGCPIASCSCVDICRNV 353


>Z31590-1|CAA83461.1|  605|Caenorhabditis elegans Hypothetical
           protein R01H10.3a protein.
          Length = 605

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -3

Query: 288 VRGGGDHLAPDLTEVISSLRESDYLCRAYEREIKRIEE 175
           V    DH+  ++ E++  L +   + R +ER I+ +EE
Sbjct: 555 VSAASDHVPQNMDELLEDLMKMKAVLRQHERRIRMLEE 592


>AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical
            protein Y46B2A.3 protein.
          Length = 1145

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
 Frame = -3

Query: 546  ELERLDQPQVLL-----D*PSDRQIVDGDLAEVLFVVDDEESAE 430
            +L+   +P VLL     D PSD+  +DG L  +  +VD  ES E
Sbjct: 994  QLDGRTEPMVLLVVLLEDSPSDQPQLDGQLEPMALLVDKRESLE 1037


>Z75527-4|CAA99779.2|  316|Caenorhabditis elegans Hypothetical
           protein C15C8.4 protein.
          Length = 316

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = +1

Query: 322 SRKQGGLGPMNIPIISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQITVND-LPV 498
           S +QG  G   I  I DK  +I   YG+  E+  + F+  +    K   +Q   N+ LP 
Sbjct: 65  SNRQGTQGTKEIDKIDDKLGKILEKYGL--EKAVLAFKEKY--KHKNLFQQTDDNEPLPS 120

Query: 499 GRSVEENLR 525
           G+  ++NL+
Sbjct: 121 GKFTDQNLQ 129


>Z29095-4|CAA82348.3|  444|Caenorhabditis elegans Hypothetical
           protein R10E11.5 protein.
          Length = 444

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 34  FEQTIINFNRMPLQLTKPAPQFKTTAVVNGEFKDVA 141
           F+   I FN  P+ +TKPA + +   V+  +  D+A
Sbjct: 114 FKAAPIRFNAPPVPITKPAKKEENRHVITSKDDDIA 149


>DQ178236-1|ABA18178.1|  316|Caenorhabditis elegans putative low
           density lipoproteinreceptor associated protein (37.4 kD)
           protein.
          Length = 316

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = +1

Query: 322 SRKQGGLGPMNIPIISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQITVND-LPV 498
           S +QG  G   I  I DK  +I   YG+  E+  + F+  +    K   +Q   N+ LP 
Sbjct: 65  SNRQGTQGTKEIDKIDDKLGKILEKYGL--EKAVLAFKEKY--KHKNLFQQTDDNEPLPS 120

Query: 499 GRSVEENLR 525
           G+  ++NL+
Sbjct: 121 GKFTDQNLQ 129


>AF242767-1|AAG36874.1|  258|Caenorhabditis elegans SF2 protein.
          Length = 258

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
 Frame = -3

Query: 447 DEESAEGDAGLLVE--DAVIARDAVRLVAYYRYVHGTETALFTGGVDPSQVGEVRVRGGG 274
           D +S  G A   VE  D   A DAVR    Y +        FT GV P       ++ GG
Sbjct: 39  DIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFTRGVGPRGPSGRPLQDGG 98

Query: 273 DHLAPD 256
           DH   D
Sbjct: 99  DHRGGD 104


>Z81070-10|CAB03004.1|  163|Caenorhabditis elegans Hypothetical
           protein F26E4.12 protein.
          Length = 163

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +1

Query: 112 VVNGEFKDVALSDFKGKYVVLFFYPLDFTFVCPTEIIAFSERADDFRKIGCEVIA 276
           V N    DV+LSD+KGK V++         +         E  D ++K G EV+A
Sbjct: 9   VKNANGDDVSLSDYKGK-VLIIVNVASQCGLTNKNYTQLKELLDVYKKDGLEVLA 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,103,116
Number of Sequences: 27780
Number of extensions: 210412
Number of successful extensions: 743
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)