Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_N18
(548 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11630.1 68416.m01425 2-cys peroxiredoxin, chloroplast (BAS1)... 182 2e-46
At5g06290.1 68418.m00705 2-cys peroxiredoxin, chloroplast, putat... 180 7e-46
At3g26060.1 68416.m03245 peroxiredoxin Q, putative similar to pe... 73 2e-13
At1g48130.1 68414.m05371 peroxiredoxin (PER1) / rehydrin, putati... 65 3e-11
At3g06050.1 68416.m00692 alkyl hydroperoxide reductase/thiol spe... 38 0.006
At3g58950.1 68416.m06569 F-box family protein contains F-box dom... 36 0.018
At1g80910.1 68414.m09493 expressed protein 35 0.041
At1g16020.2 68414.m01922 expressed protein 33 0.13
At1g16020.1 68414.m01921 expressed protein 33 0.13
At5g13270.1 68418.m01524 pentatricopeptide (PPR) repeat-containi... 31 0.67
At3g17630.1 68416.m02252 cation/hydrogen exchanger, putative (CH... 29 2.7
At5g64320.1 68418.m08079 pentatricopeptide (PPR) repeat-containi... 28 4.7
At2g27300.1 68415.m03281 no apical meristem (NAM) family protein... 28 4.7
At4g16146.1 68417.m02449 expressed protein 27 6.2
At3g55010.2 68416.m06109 phosphoribosylformylglycinamidine cyclo... 27 8.3
At3g55010.1 68416.m06108 phosphoribosylformylglycinamidine cyclo... 27 8.3
>At3g11630.1 68416.m01425 2-cys peroxiredoxin, chloroplast (BAS1)
identical to SP|Q96291 2-cys peroxiredoxin BAS1,
chloroplast precursor {Arabidopsis thaliana}; contains
Pfam profile: PF00578 AhpC/TSA (alkyl hydroperoxide
reductase and thiol-specific antioxidant) family
Length = 266
Score = 182 bits (442), Expect = 2e-46
Identities = 88/162 (54%), Positives = 115/162 (70%), Gaps = 1/162 (0%)
Frame = +1
Query: 64 MPLQLTKPAPQFKTTAVVNGEFKDVALSDFKGK-YVVLFFYPLDFTFVCPTEIIAFSERA 240
+PL K AP F+ AV + EF V LSD+ GK YV+LFFYPLDFTFVCPTEI AFS+R
Sbjct: 72 LPLVGNK-APDFEAEAVFDQEFIKVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRH 130
Query: 241 DDFRKIGCEVIAASTDSHFTHLAWINTSRKQGGLGPMNIPIISDKSHRISRDYGVLDEET 420
+F K+ EV+ S DS F+HLAW+ T RK GGLG +N P+ISD + IS+ +GVL +
Sbjct: 131 SEFEKLNTEVLGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLISDVTKSISKSFGVLIHDQ 190
Query: 421 GIPFRGLFIIDDKQNLRQITVNDLPVGRSVEENLRLVQAFQF 546
GI RGLFIID + ++ T+N+L +GRSV+E +R +QA Q+
Sbjct: 191 GIALRGLFIIDKEGVIQHSTINNLGIGRSVDETMRTLQALQY 232
>At5g06290.1 68418.m00705 2-cys peroxiredoxin, chloroplast, putative
very strong similarity to SP|Q96291 2-cys peroxiredoxin
BAS1, chloroplast precursor {Arabidopsis thaliana};
contains Pfam profile: PF00578 AhpC/TSA (alkyl
hydroperoxide reductase and thiol-specific antioxidant)
family
Length = 273
Score = 180 bits (437), Expect = 7e-46
Identities = 86/162 (53%), Positives = 116/162 (71%), Gaps = 1/162 (0%)
Frame = +1
Query: 64 MPLQLTKPAPQFKTTAVVNGEFKDVALSDFKGK-YVVLFFYPLDFTFVCPTEIIAFSERA 240
+PL K AP F+ AV + EF V LS++ GK YV+LFFYPLDFTFVCPTEI AFS+R
Sbjct: 79 LPLVGNK-APDFEAEAVFDQEFIKVKLSEYIGKKYVILFFYPLDFTFVCPTEITAFSDRY 137
Query: 241 DDFRKIGCEVIAASTDSHFTHLAWINTSRKQGGLGPMNIPIISDKSHRISRDYGVLDEET 420
++F K+ EV+ S DS F+HLAW+ T RK GGLG +N P++SD + IS+ +GVL +
Sbjct: 138 EEFEKLNTEVLGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLVSDITKSISKSFGVLIPDQ 197
Query: 421 GIPFRGLFIIDDKQNLRQITVNDLPVGRSVEENLRLVQAFQF 546
GI RGLFIID + ++ T+N+L +GRSV+E +R +QA Q+
Sbjct: 198 GIALRGLFIIDKEGVIQHSTINNLGIGRSVDETMRTLQALQY 239
>At3g26060.1 68416.m03245 peroxiredoxin Q, putative similar to
peroxiredoxin Q [Sedum lineare] GI:6899842; contains
Pfam profile: PF00578 AhpC/TSA (alkyl hydroperoxide
reductase and thiol-specific antioxidant) family
Length = 216
Score = 72.5 bits (170), Expect = 2e-13
Identities = 47/151 (31%), Positives = 80/151 (52%), Gaps = 1/151 (0%)
Frame = +1
Query: 88 APQFKTTAVVNGEFKDVALSDFKGKYVVLFFYPLDFTFVCPTEIIAFSERADDFRKIGCE 267
AP F T NG K V+L +KGK VVL+FYP D T C + AF + + F+K G E
Sbjct: 75 APDF-TLKDQNG--KPVSLKKYKGKPVVLYFYPADETPGCTKQACAFRDSYEKFKKAGAE 131
Query: 268 VIAASTDSHFTHLAWINTSRKQGGLGPMNIPIISDKSHRISRDYGVLDEETG-IPFRGLF 444
VI S D +H A+ + + + ++SD+ +++ +D+GV + G +P R +
Sbjct: 132 VIGISGDDSASHKAFASKYK-------LPYTLLSDEGNKVRKDWGVPGDLFGALPGRQTY 184
Query: 445 IIDDKQNLRQITVNDLPVGRSVEENLRLVQA 537
++D ++ I N + ++E L+ ++A
Sbjct: 185 VLDKNGVVQLIYNNQFQPEKHIDETLKFLKA 215
>At1g48130.1 68414.m05371 peroxiredoxin (PER1) / rehydrin, putative
identical to peroxiredoxin (Rehydrin homolog)
[Arabidopsis thaliana] SWISS-PROT:O04005; contains Pfam
profile: PF00578 AhpC/TSA (alkyl hydroperoxide reductase
and thiol-specific antioxidant) family
Length = 216
Score = 65.3 bits (152), Expect = 3e-11
Identities = 38/129 (29%), Positives = 62/129 (48%)
Frame = +1
Query: 151 FKGKYVVLFFYPLDFTFVCPTEIIAFSERADDFRKIGCEVIAASTDSHFTHLAWINTSRK 330
F + VLF +P DFT VC TE+ A ++ A +F K G +++ S D +H WI
Sbjct: 28 FANSWTVLFSHPGDFTPVCTTELGAMAKYAHEFDKRGVKLLGLSCDDVQSHKDWIKDIEA 87
Query: 331 QGGLGPMNIPIISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQITVNDLPVGRSV 510
+N PII+D + I ++D P R L I+ ++ + GR++
Sbjct: 88 FNHGSKVNYPIIADPNKEIIPQLNMIDPIENGPSRALHIVGPDSKIKLSFLYPSTTGRNM 147
Query: 511 EENLRLVQA 537
+E LR + +
Sbjct: 148 DEVLRALDS 156
>At3g06050.1 68416.m00692 alkyl hydroperoxide reductase/thiol
specific antioxidant (AhpC/TSA)/mal allergen family
protein identical to SP|Q9M7T0 Putative peroxiredoxin,
mitochondrial precursor {Arabidopsis thaliana}; similar
to thioredoxin peroxidase [Capsicum annuum] GI:18654477;
contains Pfam profile: PF00578 AhpC/TSA (alkyl
hydroperoxide reductase and thiol-specific antioxidant)
family
Length = 201
Score = 37.5 bits (83), Expect = 0.006
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Frame = +1
Query: 115 VNGEFKDVALSD-FKGKYVVLFFYPLDFTFVCPTE-IIAFSERADDFRKIGCE-VIAAST 285
V+ +F LSD FKGK VV+F P +T VC + + ++ D F+ G + VI S
Sbjct: 58 VSSKFSTTPLSDIFKGKKVVIFGLPGAYTGVCSQQHVPSYKSHIDKFKAKGIDSVICVSV 117
Query: 286 DSHFTHLAW 312
+ F W
Sbjct: 118 NDPFAINGW 126
>At3g58950.1 68416.m06569 F-box family protein contains F-box domain
Pfam:PF00646
Length = 417
Score = 35.9 bits (79), Expect = 0.018
Identities = 11/37 (29%), Positives = 25/37 (67%)
Frame = -1
Query: 350 MGPRPPCLREVLIQAKWVKCESVEAAITSHPILRKSS 240
+GP P L+ ++I + W++C+++E + + P+L + S
Sbjct: 99 LGPVLPMLKTLIIDSAWIRCDTIETFLPTFPVLEELS 135
>At1g80910.1 68414.m09493 expressed protein
Length = 497
Score = 34.7 bits (76), Expect = 0.041
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Frame = +1
Query: 169 VLFFYPLDFTFVCPTEIIAFSERADDFRKI-----GCEVIAASTDSH 294
+LFFYP D TF +I SE F ++ CEVI A SH
Sbjct: 33 ILFFYPPDLTFSTQLSVIGLSEGLITFTRLFSPEAACEVIEAERHSH 79
>At1g16020.2 68414.m01922 expressed protein
Length = 502
Score = 33.1 bits (72), Expect = 0.13
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Frame = +1
Query: 169 VLFFYPLDFTFVCPTEIIAFSERADDFRKI-----GCEVIAASTDSH 294
+LFFYP D F +I SE F ++ CEVI A SH
Sbjct: 31 ILFFYPADLDFSTQLSVIGLSEGLITFTRLFSPEAACEVIEAERHSH 77
>At1g16020.1 68414.m01921 expressed protein
Length = 515
Score = 33.1 bits (72), Expect = 0.13
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Frame = +1
Query: 169 VLFFYPLDFTFVCPTEIIAFSERADDFRKI-----GCEVIAASTDSH 294
+LFFYP D F +I SE F ++ CEVI A SH
Sbjct: 31 ILFFYPADLDFSTQLSVIGLSEGLITFTRLFSPEAACEVIEAERHSH 77
>At5g13270.1 68418.m01524 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 752
Score = 30.7 bits (66), Expect = 0.67
Identities = 24/77 (31%), Positives = 41/77 (53%)
Frame = -1
Query: 302 WVKCESVEAAITSHPILRKSSARSEKAIISVGHTNVKSRG*KNSTTYFPLKSERATSLNS 123
++KC S E+A + +R+ + S AIIS G+ + S+ + T+ L+S+ A+ LNS
Sbjct: 330 YIKCSSFESACRAFQEIREPNDVSWSAIIS-GYCQM-SQFEEAVKTFKSLRSKNASILNS 387
Query: 122 PLTTAVVLNCGAGLVSC 72
T++ C L C
Sbjct: 388 FTYTSIFQACSV-LADC 403
>At3g17630.1 68416.m02252 cation/hydrogen exchanger, putative
(CHX19) similar to putative Na+/H+-exchanging protein
GB:CAA23036 from [Arabidopsis thaliana]; monovalent
cation:proton antiporter family 2 (CPA2) member,
PMID:11500563
Length = 857
Score = 28.7 bits (61), Expect = 2.7
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Frame = -1
Query: 311 QAKWVKCESVEAAITSHPILRKSSARSEKAIISVGHTNVKSRG*KNSTTYFPLKSERATS 132
Q ++ V +IT+ P+L + A + +G + + G + + L A S
Sbjct: 215 QLPFIVFMGVALSITAFPVLARILAELKLLTTDIGRMAMSAAGVNDVAAWILLALAIALS 274
Query: 131 LN--SPLTTAVVLNCGAGLVSCRGILLK 54
+ SPL + VL CG G V + +K
Sbjct: 275 GDGTSPLVSVWVLLCGTGFVIFAVVAIK 302
>At5g64320.1 68418.m08079 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 730
Score = 27.9 bits (59), Expect = 4.7
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Frame = -3
Query: 282 GGGDHLAPDLTEV--ISSLRESDYLCRAYEREIKRIEE*HDVFPLKIREGDVFELSVDDG 109
GGGD E+ S E + L + ++ + R H + P ++ + + EL ++
Sbjct: 36 GGGDDGGGSSPEIGGTDSANEWEKLLKPFDLDSLR-NSFHKITPFQLYK--LLELPLNVS 92
Query: 108 CRLELWSWLSQLQ--RHSVEIYDSL 40
+EL+SW RHS ++Y L
Sbjct: 93 TSMELFSWTGSQNGYRHSFDVYQVL 117
>At2g27300.1 68415.m03281 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
Length = 335
Score = 27.9 bits (59), Expect = 4.7
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -3
Query: 501 SDRQIVDGDLAEVLFVVDDEESAEGDA-GLLVEDAVIARDAVRLVA 367
S+ QI +GD+AE VV+D+ + D ++ D +I D L A
Sbjct: 194 SEHQIPNGDIAESSNVVEDQADTDDDCYAEILNDDIIKLDEEALKA 239
>At4g16146.1 68417.m02449 expressed protein
Length = 102
Score = 27.5 bits (58), Expect = 6.2
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +1
Query: 322 SRKQGGLGPMNIPIISDKSHRI---SRDYGVLDEETGIPFRGLFIID 453
+ K GGL P P+IS S R S D+ +L +E I R + I+
Sbjct: 23 ANKYGGLVPKKKPLISKDSKRAFFDSADWALLKQEASIDQRTIAAIE 69
>At3g55010.2 68416.m06109 phosphoribosylformylglycinamidine
cyclo-ligase, chloroplast /
phosphoribosyl-aminoimidazole synthetase / AIR synthase
(PUR5) identical to phosphoribosylformylglycinamidine
cyclo-ligase, chloroplast precursor SP:Q05728 from
[Arabidopsis thaliana]; contains Pfam profiles: PF02769
AIR synthase related protein, C-terminal domain, PF00586
AIR synthase related protein, N-terminal domain
Length = 389
Score = 27.1 bits (57), Expect = 8.3
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +2
Query: 146 RILRGNTSCYSSILLISRS 202
RIL+ ++SCYSS+ ++RS
Sbjct: 4 RILQSSSSCYSSLYAVNRS 22
>At3g55010.1 68416.m06108 phosphoribosylformylglycinamidine
cyclo-ligase, chloroplast /
phosphoribosyl-aminoimidazole synthetase / AIR synthase
(PUR5) identical to phosphoribosylformylglycinamidine
cyclo-ligase, chloroplast precursor SP:Q05728 from
[Arabidopsis thaliana]; contains Pfam profiles: PF02769
AIR synthase related protein, C-terminal domain, PF00586
AIR synthase related protein, N-terminal domain
Length = 389
Score = 27.1 bits (57), Expect = 8.3
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +2
Query: 146 RILRGNTSCYSSILLISRS 202
RIL+ ++SCYSS+ ++RS
Sbjct: 4 RILQSSSSCYSSLYAVNRS 22
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,606,998
Number of Sequences: 28952
Number of extensions: 200038
Number of successful extensions: 723
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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