Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_N17
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr 1||...    26   4.4  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    26   4.4  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    25   5.9  
SPAC167.04 |pam17||presequence translocase-associated motor subu...    25   5.9  
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    25   5.9  

>SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 197

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 189 KEQIEMRSAKMAVYPMLLAERDREYLKQLRRNRDAEAELM 308
           +EQ   R  K A     LA+R  + L++L +    EAE++
Sbjct: 93  REQKSARKVKRAELEEKLAKRREQELQELEKQEKIEAEIL 132


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 198 IEMRSAKMAVYPMLLAERDREYLKQLRRNRDAEAELMRDV 317
           + +RS  + V   + AE+D EY  QL+  R+A  +  +D+
Sbjct: 178 LNLRS-HLQVQEQVYAEKDHEYSLQLQSYREAAEKAKQDI 216


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1315

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -1

Query: 352  RSP*YVP--TSHPGTSRISSASASLFLRSCFKYSLSLSANSIG 230
            R P Y+P   +   T+  +S   +LFL SCF+Y       SIG
Sbjct: 1162 REPWYIPPPANSSDTNITNSDVTALFLISCFQYIFIGVVLSIG 1204


>SPAC167.04 |pam17||presequence translocase-associated motor subunit
           Pam17 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 240 LAERDREYLKQLRRNRDAEAELMRDVPGWEVGTYYGERVYKL 365
           +A R++E+ + L +NR          P   +  YYGE++Y L
Sbjct: 135 IAAREQEFYRHLVKNRVTPQMESYSNP---IPDYYGEKIYSL 173


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 278 AKLF*ILSISFCQQHRIYSH 219
           AK+F  L + FC Q  IY H
Sbjct: 77  AKVFCDLDLEFCAQQEIYDH 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,344,525
Number of Sequences: 5004
Number of extensions: 46512
Number of successful extensions: 133
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)