Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_N17
         (568 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0161 + 23203786-23203848,23204141-23204180,23204865-232050...    28   4.5  
10_08_0190 + 15607241-15607409,15607932-15607990,15608883-156089...    28   6.0  
08_02_1084 - 24232968-24234779                                         28   6.0  
01_06_0308 - 28369843-28370925,28372249-28372944                       28   6.0  
02_05_0263 - 27257150-27259213                                         27   7.9  

>04_04_0161 +
           23203786-23203848,23204141-23204180,23204865-23205016,
           23205270-23205406,23206356-23206396,23206500-23207098,
           23207599-23207679,23208146-23208208,23209141-23209197
          Length = 410

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
 Frame = -2

Query: 447 KHV*TIRVGLYVHSIRGRLVRQECREGRA---CKHAHRSMYQLPIQAHHA*VQLQHPYFC 277
           +H  TI +G     +   +   +C EG+    C+H   +  Q PIQ  H   Q  HP  C
Sbjct: 9   RHQVTITLGRSGQVLFFEITISQCAEGKVANNCQHILANR-QKPIQLSHETTQCAHPVVC 67


>10_08_0190 +
           15607241-15607409,15607932-15607990,15608883-15608991,
           15609394-15609551,15609976-15610044,15610158-15610847,
           15611112-15611629,15611725-15611789,15613010-15613089,
           15613894-15613998,15614768-15614881,15615029-15615168,
           15615257-15615385,15615903-15616055,15616186-15616327
          Length = 899

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 485 KYDNYNLRSQLDISTFEPFAW 423
           +Y +++L   L  S+FEPFAW
Sbjct: 443 EYSHFSLEQFLSNSSFEPFAW 463


>08_02_1084 - 24232968-24234779
          Length = 603

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 246 ERDREYLKQLRRNRDAEAELMRD 314
           ERDR+Y ++  R+RD E E  RD
Sbjct: 515 ERDRDYDRERERDRDRERERDRD 537


>01_06_0308 - 28369843-28370925,28372249-28372944
          Length = 592

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 101 ILPCGYPFIWNRFVAPRRGQILFSSYLTSL 12
           ++P G    W + VA RRG  LF++ L SL
Sbjct: 195 VVPAGAADGWAKVVALRRGDALFNAALVSL 224


>02_05_0263 - 27257150-27259213
          Length = 687

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 78  YMESVCSPPEGANLVFELFDKPS 10
           YM SVC  P  A ++F+L ++ S
Sbjct: 378 YMYSVCGKPAAARVIFDLLEQKS 400


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,798,368
Number of Sequences: 37544
Number of extensions: 287104
Number of successful extensions: 689
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)