Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_N17
         (568 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25306| Best HMM Match : GRIM-19 (HMM E-Value=0.00062)               31   0.50 
SB_33691| Best HMM Match : Ras (HMM E-Value=2.8e-13)                   28   4.6  
SB_55003| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-35)                 28   6.1  
SB_2866| Best HMM Match : RasGEF (HMM E-Value=1.3e-26)                 28   6.1  
SB_57637| Best HMM Match : SRP40_C (HMM E-Value=2.3e-08)               27   8.1  
SB_46487| Best HMM Match : 7tm_1 (HMM E-Value=2.8026e-45)              27   8.1  

>SB_25306| Best HMM Match : GRIM-19 (HMM E-Value=0.00062)
          Length = 100

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +3

Query: 264 LKQLRRNRDAEAELMRDVPGWEVG 335
           L+ L+ N + EA +M+DV GW VG
Sbjct: 59  LRGLKENEELEALIMKDVKGWNVG 82


>SB_33691| Best HMM Match : Ras (HMM E-Value=2.8e-13)
          Length = 270

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 419 CMCIVFVEDWFDKSVGRDELVNTLTVVCT 333
           C  IV   DW  ++  R E + T T+ CT
Sbjct: 230 CRAIVVQHDWRSRAQHRAEFIQTSTISCT 258


>SB_55003| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-35)
          Length = 303

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 414 VHSIRGRLVRQECREGRACKHAHRSMYQLP 325
           VHS+RGRL +++     AC   + ++ QLP
Sbjct: 77  VHSLRGRLSQRQAMVIMACIWVYSALLQLP 106


>SB_2866| Best HMM Match : RasGEF (HMM E-Value=1.3e-26)
          Length = 566

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +2

Query: 353 CLQARPSRHSCRTNLPRILCTYRPTRMVQTCLYQVAILNY 472
           CL A P    C   +P + C      +V  CL  VAI+ Y
Sbjct: 99  CLMAVPIVACCLMAVPIVACCLMAVPIVACCLMAVAIVAY 138


>SB_57637| Best HMM Match : SRP40_C (HMM E-Value=2.3e-08)
          Length = 654

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 49  LRGATNRFHIKGYPQGSILAGML 117
           L G T R +I+G PQGS L  +L
Sbjct: 319 LSGRTQRVYIEGVPQGSCLGPLL 341


>SB_46487| Best HMM Match : 7tm_1 (HMM E-Value=2.8026e-45)
          Length = 352

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +2

Query: 92  KAVF*RVCYVCWVYWCDSGSPLLI*YKLQTNY*RT 196
           K VF RV   CWV+ C    PL++     T   RT
Sbjct: 125 KRVFWRVIIACWVFACCFNIPLVLVRVYNTEQART 159


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,549,541
Number of Sequences: 59808
Number of extensions: 345259
Number of successful extensions: 1019
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)