Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_N17
         (568 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043693-7|AAB97540.1|  171|Caenorhabditis elegans Hypothetical ...    73   1e-13
Z75540-6|CAN86598.1|  584|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z75540-3|CAD01084.1|  581|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z75540-2|CAA99848.1|  582|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z30215-6|CAF31477.2| 1144|Caenorhabditis elegans Hypothetical pr...    29   2.3  
U70849-6|ABD63227.1|  284|Caenorhabditis elegans Phosphatidylser...    29   3.1  
U70849-5|AAF99922.2|  400|Caenorhabditis elegans Phosphatidylser...    29   3.1  
AL031627-3|CAA20954.1|  228|Caenorhabditis elegans Hypothetical ...    29   3.1  
Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr...    28   4.1  
Z81109-12|CAE17917.2|  364|Caenorhabditis elegans Hypothetical p...    27   9.4  

>AF043693-7|AAB97540.1|  171|Caenorhabditis elegans Hypothetical
           protein C34B2.8 protein.
          Length = 171

 Score = 72.9 bits (171), Expect = 1e-13
 Identities = 40/99 (40%), Positives = 53/99 (53%)
 Frame = +3

Query: 123 AGYIGVTVGALYLYNINYKQIIKEQIEMRSAKMAVYPMLLAERDREYLKQLRRNRDAEAE 302
           A   G T   +Y      K+ I E+ E      A+ P L AERDR +LK L +NR  E E
Sbjct: 38  AAIFGATAYGVYAALEGKKKDITEKFEDVDINNAMEPFLTAERDRYWLKLLAKNRALEEE 97

Query: 303 LMRDVPGWEVGTYYGERVYKLVPPDTLVEPIFHEYYAHT 419
           +M+DVPGW+ GT+YGE VY     D   +P   E + H+
Sbjct: 98  IMKDVPGWKTGTWYGEPVY-FTLGDKWWDPTATEVFVHS 135


>Z75540-6|CAN86598.1|  584|Caenorhabditis elegans Hypothetical
           protein F37D6.2c protein.
          Length = 584

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = +2

Query: 368 PSRHSCRTNLPRI----LCTYRPTRMVQTCLYQVAILNY 472
           PSR S R N  +I    +C+Y PT+  + C   V ++N+
Sbjct: 155 PSRRSSRYNTKKIEGKFMCSYNPTKCYKLCGSVVEVINH 193


>Z75540-3|CAD01084.1|  581|Caenorhabditis elegans Hypothetical
           protein F37D6.2b protein.
          Length = 581

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = +2

Query: 368 PSRHSCRTNLPRI----LCTYRPTRMVQTCLYQVAILNY 472
           PSR S R N  +I    +C+Y PT+  + C   V ++N+
Sbjct: 154 PSRRSSRYNTKKIEGKFMCSYNPTKCYKLCGSVVEVINH 192


>Z75540-2|CAA99848.1|  582|Caenorhabditis elegans Hypothetical
           protein F37D6.2a protein.
          Length = 582

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = +2

Query: 368 PSRHSCRTNLPRI----LCTYRPTRMVQTCLYQVAILNY 472
           PSR S R N  +I    +C+Y PT+  + C   V ++N+
Sbjct: 155 PSRRSSRYNTKKIEGKFMCSYNPTKCYKLCGSVVEVINH 193


>Z30215-6|CAF31477.2| 1144|Caenorhabditis elegans Hypothetical
           protein F40F12.5 protein.
          Length = 1144

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
 Frame = +3

Query: 240 LAERDREYLKQLRRNRDAE----AELMRDVPGWEVGTYYGERVYKLV---PPDTLVEPIF 398
           +++  R+   +L RNR++     A L R V G    + YG      V   PP T+V  + 
Sbjct: 97  VSDYSRDRTTKLDRNRNSPELIVALLQRKVQGIRFSSNYGREEEPCVIEIPPGTMVREMA 156

Query: 399 HEYYAHTDPREWFKRA 446
            + +  ++ +EWF ++
Sbjct: 157 DDDWKMSELKEWFTKS 172


>U70849-6|ABD63227.1|  284|Caenorhabditis elegans Phosphatidylserine
           receptor familyprotein 1, isoform b protein.
          Length = 284

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = +3

Query: 345 GERVYKLVPPDT---LVEPIFHEYYAHTDPR-EWFKRAYIKLRS 464
           G + + L+PP     LV+P+ HE   H D    WF+  Y ++RS
Sbjct: 91  GHKRWVLIPPIAPRDLVKPMAHEKGKHPDEGITWFQTVYKRVRS 134


>U70849-5|AAF99922.2|  400|Caenorhabditis elegans Phosphatidylserine
           receptor familyprotein 1, isoform a protein.
          Length = 400

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = +3

Query: 345 GERVYKLVPPDT---LVEPIFHEYYAHTDPR-EWFKRAYIKLRS 464
           G + + L+PP     LV+P+ HE   H D    WF+  Y ++RS
Sbjct: 207 GHKRWVLIPPIAPRDLVKPMAHEKGKHPDEGITWFQTVYKRVRS 250


>AL031627-3|CAA20954.1|  228|Caenorhabditis elegans Hypothetical
           protein Y102A5C.8 protein.
          Length = 228

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = -3

Query: 458 QLDISTFEPFAW-VCMCIVFVEDWFDKSVGRDELVNTLTVVCTNFPSRHITHKFSFSIPI 282
           ++ I+TFEP        I+  E W          VNTL+     FP  H+ H   FS+P+
Sbjct: 103 EIVITTFEPIENDEAFDIIETEQWKQAKSITLHSVNTLSYF--TFPIEHLFHLCKFSVPL 160


>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical
           protein F47A4.2 protein.
          Length = 3498

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -3

Query: 155 KGSHCHTNIPSKHSIPAKILPCGYPFIWNRFVAPR 51
           K    H N   +  IP + LPC  P  W R ++ R
Sbjct: 76  KKGEFHMNYDRERKIPKEQLPCFAPHNWKRILSDR 110


>Z81109-12|CAE17917.2|  364|Caenorhabditis elegans Hypothetical
           protein R10D12.17 protein.
          Length = 364

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 84  IPARQYFSGYAMFAGYIGVTVGALYLYNINYKQIIKEQIEMR 209
           I  R+Y    +++   IGV +  LYL  +  KQ ++E +E R
Sbjct: 32  ILTRKYMRTASIYVLLIGVCIAELYLMFLPLKQKLEEFLESR 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,911,667
Number of Sequences: 27780
Number of extensions: 258193
Number of successful extensions: 570
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)